Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g1831 | ATGATGATGGCAGAGATTAGAAAGAAGAATGAAGATCAAGAGGGAGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATGAAGTGAAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGGAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCGTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCTGCACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA | 510 | 51.37 | MMMAEIRKKNEDQEGGGIKLFGTTIMLQNEVKEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAAAQSGFRQILPVKRRRDCQDGQTC | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 41135274 | 41135783 | + | Maker00036277 | Lcy5g1831 | 633646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g1831 | 169 | ProSiteProfiles | Zinc finger Dof-type profile. | 50 | 104 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy5g1831 | 169 | PANTHER | CYCLIC DOF FACTOR 2 | 30 | 103 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro) | |
| Lcy5g1831 | 169 | ProSitePatterns | Zinc finger Dof-type signature. | 52 | 88 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lcy5g1831 | 169 | Pfam | Dof domain, zinc finger | 48 | 103 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0570 | Lcy-Chr2:4891683 | Lcy5g1831 | Lcy-Chr5:41135274 | 3.86E-33 | dispersed | |
| Lcy5g1831 | Lcy-Chr5:41135274 | Lcy5g2541 | Lcy-Chr5:48173679 | 3.56E-37 | dispersed | |
| Lcy1g0269 | Lcy-Chr1:2459445 | Lcy5g1831 | Lcy-Chr5:41135274 | 8.15E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20135 | None | None | None | None | Lcy | TF |
Pathway information