Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1831 ATGATGATGGCAGAGATTAGAAAGAAGAATGAAGATCAAGAGGGAGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATGAAGTGAAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGGAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCGTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCTGCACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA 510 51.37 MMMAEIRKKNEDQEGGGIKLFGTTIMLQNEVKEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAAAQSGFRQILPVKRRRDCQDGQTC 169
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 41135274 41135783 + Maker00036277 Lcy5g1831 633646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1831 169 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g1831 169 PANTHER CYCLIC DOF FACTOR 2 30 103 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy5g1831 169 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g1831 169 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g1831 Lcy-Chr5:41135274 3.86E-33 dispersed
Lcy5g1831 Lcy-Chr5:41135274 Lcy5g2541 Lcy-Chr5:48173679 3.56E-37 dispersed
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g1831 Lcy-Chr5:41135274 8.15E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20135 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1831 - - - 0.0