Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1831 ATGATGATGGCAGAGATTAGAAAGAAGAATGAAGATCAAGAGGGAGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATGAAGTGAAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGGAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCGTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCTGCACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA 510 51.37 MMMAEIRKKNEDQEGGGIKLFGTTIMLQNEVKEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAAAQSGFRQILPVKRRRDCQDGQTC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41135274 41135783 + Maker00036277 Lcy5g1831 633646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1831 169 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g1831 169 PANTHER CYCLIC DOF FACTOR 2 30 103 IPR045174 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro)
Lcy5g1831 169 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g1831 169 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1831 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0570 Lcy-Chr2:4891683 Lcy5g1831 Lcy-Chr5:41135274 3.86E-33 dispersed
Lcy5g1831 Lcy-Chr5:41135274 Lcy5g2541 Lcy-Chr5:48173679 3.56E-37 dispersed
Lcy1g0269 Lcy-Chr1:2459445 Lcy5g1831 Lcy-Chr5:41135274 8.15E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20135 None None None None Lcy TF