Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1849 ATGCCTGCCCCTTCTTCTTCTTCCCCTCTCTCTCTCCTCTGTTTTCTCACTCTGCTTCTCATTTTCCACACACCAACTACTTGTGCTTCTGCTGCTGCTGCAGCACCTAAACAAGCCCCCGCCCGCCGCCACCGCCTGCTCTCCGTCGACTACTACGACAAAACATGCCCTCACCTCGAGCAACTTGTCTCCTCTATCACTACTCAACAGTTCAGAGACGCACCAGTCTCTGCTCCAGCAACACTACGCCTCTTCTTCCATGATTGCTTTGTAGAAGGCTGTGATGGGTCGATTCTGATATCGACGAAGCCTGGCAGCAAAGTGGCGGCGGAGAAGGATGCGGCGGACAACAAGGGGCTGAGAGCGGAAGGGTTTGAAAGCATCAAGAAGGCCAAGGCGTTGGTTGAGAGCAAGTGCCCCGGTGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGGCCGTATTACCCGGTGAAGAAGGGACGATGGGACGGGAAGATATCAATGGCGGCCAGAGTAGGCTCCAATCTACCGCGAGCAAATTCCACCGTCGATCAGCTTCTGAAACTCTTCAATTCCAAAGGACTATCCGCCGATGACCTCGTTGTCCTCTCCGGTGCGCACACGATCGGATTTGCGCACTGCGAGCATTTCACAAACCGTTTGTACGACTACAGAGGCACGAAGCAACCGGATCCGGCGATCGACGGGAGGCTGCTGAAGGAGCTTAAAATGTCGTGCCCTCGCTACGGCGGAAATACGGACATTGTGGCGCCGTTCGATGTAACGACGCCGTTTGTGTTCGATCATGCGTACTACGGGAATTTGGAAGGAAAATTGGGGCTATTGGCTACGGATCAAGCTCTGGTTTCGGATGCGAGGATGAAGACGATTGTACAGAGTCTGGCGAAGGATAAGCAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGATCGATTGGTGTGAAGAGGGGACGAAGACATGGAGAGCGAAGGACGGATTGTAGCATTCATCAGAATTAA 1059 53.16 MPAPSSSSPLSLLCFLTLLLIFHTPTTCASAAAAAPKQAPARRHRLLSVDYYDKTCPHLEQLVSSITTQQFRDAPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRAEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYPVKKGRWDGKISMAARVGSNLPRANSTVDQLLKLFNSKGLSADDLVVLSGAHTIGFAHCEHFTNRLYDYRGTKQPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQALVSDARMKTIVQSLAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDCSIHQN 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41319113 41321706 + Maker00036599 Lcy5g1849 633664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1849 352 CDD secretory_peroxidase 47 348 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy5g1849 352 PANTHER - 41 349 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 Pfam Peroxidase 65 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 Gene3D - 50 349 - -
Lcy5g1849 352 ProSitePatterns Peroxidases proximal heme-ligand signature. 209 219 IPR019793 -
Lcy5g1849 352 PRINTS Haem peroxidase superfamily signature 78 92 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Haem peroxidase superfamily signature 209 224 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Haem peroxidase superfamily signature 161 173 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Haem peroxidase superfamily signature 143 160 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Haem peroxidase superfamily signature 270 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 Gene3D Peroxidase, domain 2 187 329 - -
Lcy5g1849 352 SUPERFAMILY Heme-dependent peroxidases 47 349 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 ProSiteProfiles Plant heme peroxidase family profile. 46 351 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 ProSitePatterns Peroxidases active site signature. 78 89 IPR019794 GO:0004601(InterPro)
Lcy5g1849 352 FunFam Peroxidase 50 196 - -
Lcy5g1849 352 FunFam Peroxidase 187 329 - -
Lcy5g1849 352 PRINTS Plant peroxidase signature 123 136 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 208 220 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 268 283 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 56 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 161 176 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 80 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 324 337 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 142 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g1849 352 PRINTS Plant peroxidase signature 284 301 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1849 Lcy-Chr5:41319113 Lcy6g0205 Lcy-Chr6:1839494 1.89E-77 dispersed
Lcy5g1849 Lcy-Chr5:41319113 Lcy8g0730 Lcy-Chr8:26949638 1.72E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1849 K00430 - csv:101216263 634.024