Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1855 ATGCTTCTCCCACTCTTCCTCTTCCTCTCCACCTTCCTCTCAAACCCTTCTCTTCTCTCCCTCTCCCTCTCCCAAGAAGGCCTCTATCTTCACACCATCAAGCTCTCTTTCGACGATCCAGATTCCGCCCTCCGCTCATGGAACGACCGCGACGACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCCAAAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTTCCCTCTCTCCTTTGCCGCCTCCAGAATCTCTCCTTCCTCTCGCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGAGTGTTCCAGCCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTTCCCAGTTCGATTTCTGATCTTCCGAACCTCCGGTATTTGGATTTGACTGGGAATAACTTCTCCGGCGACATTCCAGCGAGCTTCGCCCGGTTTCGGAAGCTGGAGGTTCTGTCTCTTGTTTATAATCTTCTCGACGGGCCAGTGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTAAACCTGTCTTACAACCCGTTTGAGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTTTGGCTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAACGGCTGACCGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCGATTCCAAAGACGCTGACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACGGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACCTCATTGCGACTGTTTGACGCGTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAGTTGCCGCTTGAGAGTCTCAATCTCTACCAGAACAAGTTTGAGGGGAAGTTACCGGAAAGCATTGCGAACTCGCCAGGTTTATATGAACTCAGACTTTTCAGTAACCGGCTCACCGGCGAGTTACCGCGAAATCTTGGCAAGAACTCGCCGTTGAGGTGGATTGATGTTTCTGACAACCAGTTTTCCGGCAAAATCCCTGAGAATTTGTGTGAGAAGAGAGAGTTGGAGGAGCTTCTGATGATCAACAACCAGTTCTCCGGGGAGATTCCGGCGAGTTTGGGTGAGTGCGAGAGTCTGACGAGGGTGCGATTAGGTTACAACCAGCTTTCCGGCGAGGTTCCGGCGGGATTTTGGGGTCTCCCGCATGTGTATCTGTTGGAGTTGGTGAGTAACTCGTTTTCTGGGCGAATTTCGGATGCCATTGCCACTGCGAAGAACCTTTCGATTTTCATCATCTCTAAGAACAACTTCACGGGCACGATTCCGGCGGAGTTGGGACGGCTGGAAAATCTTGTGAAGTTGTTAGCAACTGATAACAAACTCAATGGATCTTTGCCAGGGAGTCTTGTGAATCTTCGGCAGCTTTCGAGTTTGGATCTTCGGAATAATGAACTCTCTGGAGACCTTCCCAGTGGAATCAAGTCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTTTCTGGCGAAATCCCTGAAGAAATTGGATCATTGCCTGTTCTTAATTACCTCGATCTGTCTGGAAATCTGTTCTCTGGGAACATCCCACTTGAGTTACAGAATTTGAAGCTCAATCTGCTCAATTTATCGAACAATCACTTGTCCGGTGAGCTTCCTCCGTTTTTAGCCAAGGGAAACTACAGAAATAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTGGAAAGATTGTGCAACAGCAAAGGTGAAGCTAAAAGCGAGGGCTATCTCTGGTTGCTGCGCTCCATCTTCTTCCTTGCCGGTATCGTGTTTATCTTCGGCGTCGTCTGGTTTTACCTAAAATACAGGAAGTTTAAGCTGGCAAAGAGAGAAATGGAGAAGGGCAAGTGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGACTGTCTTGATGAAGACAATGTCATAGGCAGTGGATCTTCTGGTAAAGTCTACAAGGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAGCTGTTTGGAGGGATGAGGAAAGACGGCGATAAAGGCGATGTCGAGAAGGGTCAAGTTCAAGACAATGGCTTCGAAGCCGAAATCGATACTCTTGGAAAGATTAGGCACAAGAACATTGTGAAGTTGTGGTGCTGCTGCGTTACAAGAGACTACAAGCTTTTGGTCTATGAATATATGCCTAACGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTGGATTGGCCTACAAGGTTTAAGATAGCTTTGGATGCTGCAGAAGGGCTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTACACCGAGACATTAAGTCAAACAACATCTTGTTGGATGGTGACTTTGGAGCACGGTTGGCCGATTTCGGTGTAGCTAAGGTCATCGATTCAACTCCGAAGGGACCTAAATCCATGTCGGTCATCGCAGGATCTTGCGGTTACATTGCTCCAGAGTATGCTTATACACTCCGAGTTAACGAGAAAAGCGACATATACAGTTTCGGCGTGGTAATCCTCGAGCTAATAACCGGGAGGCTCCCGATCGATCCAGAGTTCGGGGAGAAAGATTTGGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATTGACCAAGTACTCGACCCGAAACTTGACAGTTGTTTCAAGGAAGAAATATGCAGAGTCCTGAACATTGGCCTCCTCTGCACCAGCCCTCTTCCAATCAACCGCCCATCCATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGAGCAGAGAACCAATTCAAAACCAACAGTAAAGATGGAAAGCTAACTCCTTACTACTACGAAGATGCCTCAGATCAAGGAAGTGTAGCATAG 2994 48.0 MLLPLFLFLSTFLSNPSLLSLSLSQEGLYLHTIKLSFDDPDSALRSWNDRDDTPCSWFGVSCDPKTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISECSSLQHLDLSQNLLTGELPSSISDLPNLRYLDLTGNNFSGDIPASFARFRKLEVLSLVYNLLDGPVPAFLGNITSLKMLNLSYNPFEPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLYGPIPKTLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYQNKFEGKLPESIANSPGLYELRLFSNRLTGELPRNLGKNSPLRWIDVSDNQFSGKIPENLCEKRELEELLMINNQFSGEIPASLGECESLTRVRLGYNQLSGEVPAGFWGLPHVYLLELVSNSFSGRISDAIATAKNLSIFIISKNNFTGTIPAELGRLENLVKLLATDNKLNGSLPGSLVNLRQLSSLDLRNNELSGDLPSGIKSWKNLNELNLANNEFSGEIPEEIGSLPVLNYLDLSGNLFSGNIPLELQNLKLNLLNLSNNHLSGELPPFLAKGNYRNSFLGNPDLCGHLERLCNSKGEAKSEGYLWLLRSIFFLAGIVFIFGVVWFYLKYRKFKLAKREMEKGKWTLMSFHKLDFSEYEILDCLDEDNVIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDGDKGDVEKGQVQDNGFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDIKSNNILLDGDFGARLADFGVAKVIDSTPKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPEFGEKDLVKWVCFTLDQDGIDQVLDPKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQFKTNSKDGKLTPYYYEDASDQGSVA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41365553 41369262 - Maker00036619 Lcy5g1855 633670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1855 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 981 - -
Lcy5g1855 997 SUPERFAMILY RNI-like 204 580 - -
Lcy5g1855 997 ProSiteProfiles Protein kinase domain profile. 684 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1855 997 Pfam Protein kinase domain 687 905 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1855 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1855 997 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Lcy5g1855 997 Gene3D Ribonuclease Inhibitor 259 330 IPR032675 -
Lcy5g1855 997 Pfam Leucine Rich Repeat 357 376 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine Rich Repeat 309 329 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine Rich Repeat 572 591 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine Rich Repeat 264 283 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 SMART serkin_6 684 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1855 997 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515(InterPro)
Lcy5g1855 997 SUPERFAMILY L domain-like 25 254 - -
Lcy5g1855 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 967 IPR050647 -
Lcy5g1855 997 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Lcy5g1855 997 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Lcy5g1855 997 SUPERFAMILY Protein kinase-like (PK-like) 676 964 IPR011009 -
Lcy5g1855 997 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524(InterPro)
Lcy5g1855 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 186 - -
Lcy5g1855 997 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lcy5g1855 997 Gene3D Phosphorylase Kinase; domain 1 651 771 - -
Lcy5g1855 997 Gene3D Transferase(Phosphotransferase) domain 1 772 990 - -
Lcy5g1855 997 SMART LRR_sd22_2 498 527 - -
Lcy5g1855 997 SMART LRR_sd22_2 235 261 - -
Lcy5g1855 997 SMART LRR_sd22_2 114 140 - -
Lcy5g1855 997 SMART LRR_sd22_2 90 107 - -
Lcy5g1855 997 FunFam Receptor-like protein kinase HSL1 308 615 - -
Lcy5g1855 997 FunFam Receptor-like protein kinase HSL1 668 771 - -
Lcy5g1855 997 Gene3D Ribonuclease Inhibitor 331 616 IPR032675 -
Lcy5g1855 997 SMART LRR_typ_2 138 161 IPR003591 -
Lcy5g1855 997 SMART LRR_typ_2 211 235 IPR003591 -
Lcy5g1855 997 SMART LRR_typ_2 283 307 IPR003591 -
Lcy5g1855 997 SMART LRR_typ_2 498 521 IPR003591 -
Lcy5g1855 997 SMART LRR_typ_2 90 114 IPR003591 -
Lcy5g1855 997 SMART LRR_typ_2 186 210 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2082 Lcy-Chr1:27892884 Lcy5g1855 Lcy-Chr5:41365553 8.69E-57 dispersed
Lcy4g0505 Lcy-Chr4:6134983 Lcy5g1855 Lcy-Chr5:41365553 1.13E-191 dispersed
Lcy5g0425 Lcy-Chr5:4426558 Lcy5g1855 Lcy-Chr5:41365553 4.93E-15 dispersed
Lcy5g1855 Lcy-Chr5:41365553 Lcy9g1650 Lcy-Chr9:41654795 3.89E-97 dispersed
Lcy9g1631 Lcy-Chr9:41458414 Lcy5g1855 Lcy-Chr5:41365553 3.09E-27 transposed
Lcy1g0315 Lcy-Chr1:2788352 Lcy5g1855 Lcy-Chr5:41365553 8.06E-177 wgd
Lcy4g0696 Lcy-Chr4:8389341 Lcy5g1855 Lcy-Chr5:41365553 8.57E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65946 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1855 - - - 0.0