Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1875 ATGGAGGAAGATGCTCATTCCTGGTTAAGAAGAACCAAGTTTTCTCACACGATATGCTACCGTTTAGAGTCCTTACAATTGGCTTCCTTTCCTGTCACCACTCAGCCACCACTCAATTCAGTTGTGCAATCAAAAGCTTTCACGGCTCCTTCTCATCATAGATCTACCCTTCGTTATAACCTACATATTGCGAACGGTCACACTCTCAACAAGCATAGGTCTCTGTCTCCTCCTCCACAAACTACACTCTCTGGCGCATTTAAGGATGCACAAACCGATCAGAAGCGATTTTCAACTCCACAGCCTCAGAGGAGAGAACACAGAAAAGAGAAGGGTAAAAGGCTATTCAGTAAAGAAGCTAAGGTGCACAATTCCTCAAGGGAAGAGAAGTTAAGAAGCCCTCTGAGGCATCTTGCCTCATTTAAGGGTAACGAGAAATCCAAGTTCAGGAAGGAATCTTCTTGGACCAAGTTTTTTGAGCACAGTGGAGGAAAGGTCACTGCTGTTGAAGCAGTAGATGAATTGTCTGTTGACTTGTCCAAGTTGTTTCTTGGGCATAGATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGAATTTACAATGATAAAGTTGTTGCTGTTAAGATCATCAATTTACCGGACGATGACGAAAATGGAGATCTCGCAGGTCGCTTAACAAAGCAGTTTGGTAGGGAAGTAACCCTTTTATCTCGTCTCCACCATCCGAATGTTATAAAGTTGGTATCAGCTTGTAGAAAGCCACCAGTTTATTGTATCATCACGGAGTATCTATCTCAGGGTTCCTTAAGGGCATATCTACACAAACTTGAAAACAAATCTCTCCCACTGCAAAAACTGATTGCCATCGCCTTGGACATTGCTCGTGGGATGGAGTACATTCACTCACAAGGCGTCATTCATCGGGATCTCAAACCTGAAAACGTTCTTATCGATCAAGACTTTTGCCTAAAGATCGCCGATTTCGGCATCGCTTGTGAGGAGGCACATTGTGATATTTTGGCCGATGACCCTGGAACTTACCGTTGGATGGCCCCCGAGATGATCAGACGTAAACCTTACGGACGAAAGGTTGATGTCTACAGCTTTGGACTTATTCTGTGGGAATTGGTGGCTGGAAAAATCCCTTATGAGGATATGACTCCCATCCAAGCAGCTTATGCAGTTGTAAATAAGAATATTAGACCAATCATCCCGAGGGAGTGTCCTCCGGTGATGCGGGCGTTGATCGAGCAATGTTGGTCAGTGCAACCGGAAAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTATTAGAGCAAGTTGAGGGTTCAGTTGAGGGAGATGGTACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTCTAAAGCATTGGATACAAAAGCTTGGTCCTCTTCATTCTCAGACTTCTGTCACCTCCAGATCTAAATTCATATGA 1473 44.33 MEEDAHSWLRRTKFSHTICYRLESLQLASFPVTTQPPLNSVVQSKAFTAPSHHRSTLRYNLHIANGHTLNKHRSLSPPPQTTLSGAFKDAQTDQKRFSTPQPQRREHRKEKGKRLFSKEAKVHNSSREEKLRSPLRHLASFKGNEKSKFRKESSWTKFFEHSGGKVTAVEAVDELSVDLSKLFLGHRFAYGAHSRLYHGIYNDKVVAVKIINLPDDDENGDLAGRLTKQFGREVTLLSRLHHPNVIKLVSACRKPPVYCIITEYLSQGSLRAYLHKLENKSLPLQKLIAIALDIARGMEYIHSQGVIHRDLKPENVLIDQDFCLKIADFGIACEEAHCDILADDPGTYRWMAPEMIRRKPYGRKVDVYSFGLILWELVAGKIPYEDMTPIQAAYAVVNKNIRPIIPRECPPVMRALIEQCWSVQPEKRPEFWQVVKVLEQVEGSVEGDGTLMNVEQKPSWEDHKKGLKHWIQKLGPLHSQTSVTSRSKFI 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41596723 41599888 + Maker00036504 Lcy5g1875 633690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1875 490 CDD STKc_MAP3K-like 191 438 - -
Lcy5g1875 490 ProSiteProfiles Protein kinase domain profile. 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 PRINTS Tyrosine kinase catalytic domain signature 262 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 Gene3D Phosphorylase Kinase; domain 1 170 266 - -
Lcy5g1875 490 MobiDBLite consensus disorder prediction 69 131 - -
Lcy5g1875 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 MobiDBLite consensus disorder prediction 69 98 - -
Lcy5g1875 490 FunFam serine/threonine-protein kinase HT1 267 459 - -
Lcy5g1875 490 PANTHER SERINE-THREONINE PROTEIN KINASE 80 440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy5g1875 490 SUPERFAMILY Protein kinase-like (PK-like) 166 438 IPR011009 -
Lcy5g1875 490 Gene3D Transferase(Phosphotransferase) domain 1 267 481 - -
Lcy5g1875 490 SMART serkin_6 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 Pfam Protein tyrosine and serine/threonine kinase 187 438 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1875 490 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2018 Lcy-Chr11:43752849 Lcy5g1875 Lcy-Chr5:41596723 1.35E-24 dispersed
Lcy12g1583 Lcy-Chr12:35915043 Lcy5g1875 Lcy-Chr5:41596723 4.71E-23 dispersed
Lcy2g0117 Lcy-Chr2:885342 Lcy5g1875 Lcy-Chr5:41596723 1.57E-67 dispersed
Lcy3g0858 Lcy-Chr3:30969604 Lcy5g1875 Lcy-Chr5:41596723 1.08E-75 dispersed
Lcy5g0042 Lcy-Chr5:567813 Lcy5g1875 Lcy-Chr5:41596723 1.14E-69 dispersed
Lcy5g1875 Lcy-Chr5:41596723 Lcy5g2226 Lcy-Chr5:45283082 4.67E-102 dispersed
Lcy4g1554 Lcy-Chr4:39297256 Lcy5g1875 Lcy-Chr5:41596723 7.72E-32 transposed
Lcy1g0342 Lcy-Chr1:3064777 Lcy5g1875 Lcy-Chr5:41596723 1.18E-228 wgd
Lcy5g1875 Lcy-Chr5:41596723 Lcy8g1615 Lcy-Chr8:42719413 8.48E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65947 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1875 - - - 0.0