Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1879 ATGAACGTTACGATGGCTCCGGCGGGGATGAAAAGGCCACGGCGGCCGTTGATTAGTGTCTCTCTGAATCTCTCTGAAATTTTCTTGGACGAAATGTACGTGGGGTTCACGAGCGCCACAGGGCGGTTAATTCAAGGCCACAACGTTTTGGCCTGGAGTTTTAGCAACTCCAATTTTTCATTGAGCGAGGGTTTGATTACCACTGGATTGCCCTCCTTCGTCCTCCCAAAAGACCCATTTACCAAATCGAAATGGTTCATCGCCGGAGTGACAGTCGGCGGATTCCTCGTCGTTTGCTTTGTCGCTGCGATTTTGGGGATTCTGATCGCCGACCACCGGAGGAGAGCGAGGGCGAGAGCGGAAATGGAGGATTGGGAATTGGAGTACTGGCCGCATCGAATCACATACCAAGAAATCGAATCGGCGACGAAGGGGTTTGCAGAAGAAAATGTCATCGGAATCGGAGGGAACGGGAAAGTTCATAAAGGGGTTTTGGCCGGAGGAGGTTCAGAAGTTGCAGTGAAGCGAATTTCCCACGAGAACGACGGGATGCGAGAGTTCATAGCTGAAATTTCAAGCATAGGGAGATTGAAGCACAGAAATCTCGTCAGTCTGAGGGGTTGGTGTAAGAAAGAGAAGGGAAGTTTCTTGCTGGTGTACGATTACATGGAAAATGGAAGTTTAGACAAATGGGTATTCGATTGCGATGAGAGAAACATGATGAGCTGCGAGGATCGAATCAGAATATTGAAAAACGTAGCCTCAGGGGTGTTGTATTTACACGAGGGATGGGAATCGAAGGTCCTTCATAGGGACATAAAAGCCAGCAATGTGTTGCTGGACAAGGACATGAATGGAAGGCTAGGAGATTTCGGGTTGGCTCGAGTCCACGGCCACGGCCAAGTGGCTAGCACGACGAGAGTCGTTGGCACGATGGGCTACATCGCGCCCGAGTTGATTCGGACCGGACGAGCATCGGCTCAATCCGACGTGTTTGGTTTTGGAGTTCTGATTTTGGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCGTTGGTGGATTGGGTTCGGCGGTTGGTCGTAGAAGGGGAGTTGACCGCGGCACTCGACGAGAGGGTGAGGAAGAAGGGCGGGTGGAGCGAGGAGGAAGTCGAGAGAGTGATGCATTTGGGGTTGTTGTGTGTGCATCCTGACCCGAACACTCGGCCGACGATGAGACAAGTTGTGAAAGTTTTGGAAGGGAAGATTGAGTTGGATGAGAATGAGAGTGAGAGTATGAATGCTTATTTGCTTCAAAGATTGAAGTCACAAGAAATGTGGTCTGATTCTACGGTTGGTTTTGAGCATAAATTACATCCAACTTTTGAGGATTTTCTTCAGTCTTCTTCAACTTCCCTCTCTTGGTCTACTTCCAATGTCACTGGCAGGTGA 1440 49.86 MNVTMAPAGMKRPRRPLISVSLNLSEIFLDEMYVGFTSATGRLIQGHNVLAWSFSNSNFSLSEGLITTGLPSFVLPKDPFTKSKWFIAGVTVGGFLVVCFVAAILGILIADHRRRARARAEMEDWELEYWPHRITYQEIESATKGFAEENVIGIGGNGKVHKGVLAGGGSEVAVKRISHENDGMREFIAEISSIGRLKHRNLVSLRGWCKKEKGSFLLVYDYMENGSLDKWVFDCDERNMMSCEDRIRILKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASAQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLVVEGELTAALDERVRKKGGWSEEEVERVMHLGLLCVHPDPNTRPTMRQVVKVLEGKIELDENESESMNAYLLQRLKSQEMWSDSTVGFEHKLHPTFEDFLQSSSTSLSWSTSNVTGR 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41646842 41648281 - Maker00036726 Lcy5g1879 633694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1879 479 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 211 IPR013320 -
Lcy5g1879 479 Gene3D - 1 74 - -
Lcy5g1879 479 Pfam Legume lectin domain 1 58 IPR001220 GO:0030246(InterPro)
Lcy5g1879 479 SUPERFAMILY Protein kinase-like (PK-like) 124 416 IPR011009 -
Lcy5g1879 479 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524(InterPro)
Lcy5g1879 479 Gene3D Phosphorylase Kinase; domain 1 108 222 - -
Lcy5g1879 479 SMART serkin_6 146 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1879 479 Pfam Protein kinase domain 147 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1879 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1879 479 CDD STKc_IRAK 152 417 - -
Lcy5g1879 479 Gene3D Transferase(Phosphotransferase) domain 1 223 440 - -
Lcy5g1879 479 ProSiteProfiles Protein kinase domain profile. 146 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1879 479 PANTHER - 1 422 IPR050528 GO:0005886(PANTHER)
Lcy5g1879 479 FunFam L-type lectin-domain containing receptor kinase S.4 223 428 - -
Lcy5g1879 479 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 108 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1879 Lcy-Chr5:41646842 Lcy9g0283 Lcy-Chr9:7252774 3.46E-114 dispersed
Lcy4g0652 Lcy-Chr4:7823931 Lcy5g1879 Lcy-Chr5:41646842 9.94E-174 wgd
Lcy5g1879 Lcy-Chr5:41646842 Lcy8g1625 Lcy-Chr8:42832368 9.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65948 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1879 - - - 0.0