Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1899 ATGCAAACGGTAAGATTTCGCTGTTTAGATCACAGAGTTACAGTAAAGTTTAAAGCCGTCAATTTCGCTGCGAGGGGGAAAGGAGCTTGGCCAGCTGAGCAGAACAGCTGCAGCCTTGTGAATTTGAGAGAGAAGAGGCCTCAAGCCTTTGATGGAGTATTGATTTTCGTTCTGCAAGAGAGTCGACGATGGTTCCCCCGTGCTCGAGAAAACACATACTTATACGTAGGTGGACTAGACTTACAGAAATACGGTCCAAGTATGAGTTGCATCTGCTTCGGCTCCTCTACTTTGGAGAAGAAACGGGTATCTACTCGTGCTGAGGAGGAGTTGGACATTGACTTGCTTGAGAATGCTAAACAATTCTCCTTCAATGAATTAAGATCTGCGACAGAGAATTTCCATTCGAACAATAGAATTGGACGTGGAGGCTTTGGAATTGTTTACAAGGGCACATTAAGGACTGGAGTGCAGGTTGCAGTAAAGAAACTTTCTATAGAGTCTAAGCAAGGGGCTCGGGAATTTTTGACAGAGATCAGAACCATTTCAAATGTCAAGCATCCAAATCTTGTTGAGTTGATTGGATGCTGTTCTCAAAGAACTAACCGGATCTTGGTCTATGAATATCTGGAAAATAATAGTCTCGACCATGCTTTGTTAGATTCTAAGAATACAAGTGTCAAACTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGCACTGCTAGGGGCCTCCAATTTCTTCACGAGGAACTTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATAGGGACTTCAATCCGAAAATTGGCGACTTCGGATTAGCTAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACGTATGTCATATTACTTGCTTTTATTTTTTTGTTCTGTATTTTTCTATTTTACTATTCATACTCTTATTCCATTGTTTTCTTAATGCTTATGTTACAAACTTACACCATACTTCAATATTGA 1020 40.59 MQTVRFRCLDHRVTVKFKAVNFAARGKGAWPAEQNSCSLVNLREKRPQAFDGVLIFVLQESRRWFPRARENTYLYVGGLDLQKYGPSMSCICFGSSTLEKKRVSTRAEEELDIDLLENAKQFSFNELRSATENFHSNNRIGRGGFGIVYKGTLRTGVQVAVKKLSIESKQGAREFLTEIRTISNVKHPNLVELIGCCSQRTNRILVYEYLENNSLDHALLDSKNTSVKLDWGKRSSICIGTARGLQFLHEELVPRIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTYVILLAFIFLFCIFLFYYSYSYSIVFLMLMLQTYTILQY 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41808317 41811247 + Maker00036482 Lcy5g1899 633714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1899 339 FunFam Os07g0541700 protein 210 299 - -
Lcy5g1899 339 Pfam Protein kinase domain 134 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1899 339 SUPERFAMILY Protein kinase-like (PK-like) 117 300 IPR011009 -
Lcy5g1899 339 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524(InterPro)
Lcy5g1899 339 SMART serkin_6 134 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1899 339 FunFam cold-responsive protein kinase 1 105 209 - -
Lcy5g1899 339 Gene3D Phosphorylase Kinase; domain 1 103 209 - -
Lcy5g1899 339 ProSiteProfiles Protein kinase domain profile. 134 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1899 339 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 300 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lcy5g1899 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1899 339 Gene3D Transferase(Phosphotransferase) domain 1 210 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1899 Lcy-Chr5:41808317 Lcy6g0701 Lcy-Chr6:6834561 7.39E-72 dispersed
Lcy5g1899 Lcy-Chr5:41808317 Lcy9g1396 Lcy-Chr9:38975458 1.01E-62 transposed
Lcy5g1899 Lcy-Chr5:41808317 Lcy9g1392 Lcy-Chr9:38928900 1.88E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65949 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1899 - - - 0.0