Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1935 ATGAACGACTTATTCTCGAATTCGTTCAAAAAGTACACGGATCTGAAGCAACAGGCGTATCTGGACAGCATGGAGGCTGGGAATGAGAGTGTGAATTTGGACAGATTCTTCGAGGATGTTGAGAATGTTAAAGACGACATGAAACAGGTGGAGAGTCTGTACAAGAAATTGCAGCAGGACAACGAGGAGTGCAAGATCGTGCACAATGCCAAGACGATGAAGGAGCTGAGGGCTAGAATGGAGACCGACGTCGCACAGGTTCTGAAGCGAGTCAAGATGATCAAAGGGAAGCTCGAGGCTCTGGACCGTTCCAACGCCGCTCACCGGAGCCTCCCCGGCTGCGGCCCTGGCTCCTCCGCCGACCGGACTCGCACCTCCGTCGTCAGTGGCTTGGGAAAGAAGCTCAAAGATGTCATGGATGATTTCCAAGGACTGAGAGCTCGAATGAACGCCGAGTACAAAGAAACCGTCGAGCGAAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCGAGTGGGGAAAGCGAGAGCTTCCTGCAGAAAGCGATTCAAGAACAGGGGAGGGGCCAGATAATGGACACGATTTCAGAGATTCAGGAGCGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGCTAGAGCTGCATCAGATTTTCTTGGACATGGCGGCTTTGGTGGAGGCTCAAGGGCACCAGCTCAACGACATCGAGAGCCATGTGGCACATGCCAACTCCTTTGTCAGACGAGGAACAGAGCAACTTCAGGAAGCTCGAGAGTACCAGAAAAGCTCTAGGAAGTGGACTTGCTATGCCGTCATTTTGGGGATTGTTCTCCTTGTGATTCTTCTCTTCCCAATCTTCACTTCGATTTTACCTCATTTGTTGTAG 912 50.66 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRARMETDVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLVILLFPIFTSILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42182030 42183378 - Maker00036903 Lcy5g1935 633750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1935 303 CDD SNARE_syntaxin1-like 202 264 - -
Lcy5g1935 303 PANTHER SYNTAXIN 35 285 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy5g1935 303 Gene3D - 193 296 - -
Lcy5g1935 303 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Lcy5g1935 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy5g1935 303 Coils Coil 33 67 - -
Lcy5g1935 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lcy5g1935 303 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Lcy5g1935 303 SMART tSNARE_6 198 265 IPR000727 -
Lcy5g1935 303 Gene3D - 33 160 - -
Lcy5g1935 303 FunFam Syntaxin 132 196 296 - -
Lcy5g1935 303 Pfam SNARE domain 240 291 IPR000727 -
Lcy5g1935 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Lcy5g1935 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Lcy5g1935 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0712 Lcy-Chr11:20286431 Lcy5g1935 Lcy-Chr5:42182030 6.19E-74 dispersed
Lcy1g1665 Lcy-Chr1:17190631 Lcy5g1935 Lcy-Chr5:42182030 5.24E-86 dispersed
Lcy5g1935 Lcy-Chr5:42182030 Lcy5g2615 Lcy-Chr5:48884730 1.05E-112 dispersed
Lcy5g1935 Lcy-Chr5:42182030 Lcy5g0507 Lcy-Chr5:5585492 1.05E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1935 K08486 - csv:101217140 561.992