Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1939 ATGCCAACGCACGCTTTCTATACCAGGGTTTCCAGAGTTTTCCGGGAGCATTCTTCGCTCTCTAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCCGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCGATGTAGGTGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATTTTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTACTTTGCATTCACTCCATTATTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCAATTCGCAACATTGTGAGGAAGAAAAGGGTAGACATCAGATTCAATGAAGCGGAATGCTACAAGATTGATGCTGAAAATAGAAAACTGTATTGTCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGATTATGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGTGTCGTGGAGAATTGTCATTTTTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACCCTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAAGACTTGGTCAAATTATATCCTGGACTTAAAGAATTTGTAAAAATTACTCTTCTCGAGGCAGGAGATCATATCTTAAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAAGAAATGAAGAATGGAGAAATATCTTCTATGCCCTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGGGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAAAGTCATGGTAGATATTTCAGCAATTTTTAACAAGGCAGACATAGACAATTCTGGGACACTTACAGTAAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAAGTGGAGCTATATTTGAAGAATAAGCAGATGAACGACATTGTTGATCTTTTGAAAGGATCCAAAGGGGATGTGGCAAAGGAGTCTATCGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCGCAACAAGGTGCATATCTTGCCCATTGTTTTAATCGCATGGAAGAGTGCGAACAAAATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGTTTTCGGCCCTTTAGGTACTATTCTCTCTCTTTCTCTCTCTTGATTTGA 1581 40.73 MPTHAFYTRVSRVFREHSSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKADVGEKKKKVVVLGTGWAGTSFLKNFKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLKEFVKITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMVDISAIFNKADIDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMNDIVDLLKGSKGDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEQNPEGPLRFRGSGRHRFRPFRYYSLSFSLLI 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42207229 42213373 + Maker00036139 Lcy5g1939 633754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1939 526 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 380 IPR023753 GO:0016491(InterPro)
Lcy5g1939 526 SUPERFAMILY FAD/NAD(P)-binding domain 218 379 IPR036188 -
Lcy5g1939 526 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Lcy5g1939 526 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Lcy5g1939 526 Coils Coil 446 466 - -
Lcy5g1939 526 PANTHER NADH DEHYDROGENASE 49 520 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Lcy5g1939 526 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Lcy5g1939 526 Gene3D - 426 525 - -
Lcy5g1939 526 Gene3D - 51 410 - -
Lcy5g1939 526 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Lcy5g1939 526 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Lcy5g1939 526 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Lcy5g1939 526 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Lcy5g1939 526 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Lcy5g1939 526 SUPERFAMILY EF-hand 375 470 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1939 Lcy-Chr5:42207229 Lcy8g1736 Lcy-Chr8:43853081 4.50E-64 dispersed
Lcy4g0618 Lcy-Chr4:7387671 Lcy5g1939 Lcy-Chr5:42207229 1.33E-239 wgd
Lcy5g1939 Lcy-Chr5:42207229 Lcy8g1504 Lcy-Chr8:41716806 2.89E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1939 K03885 - csv:101204145 962.985