Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1952 ATGGGGGAGATCTGTAATCTGGCTCTAAGAGCAAAAACTCCCCCGTATGAAAGGAGATCTGGACAGATTATCCGTAATCTGGCTCTAAGAGCAACTCCTCCGTATGAAAGGAGATCTGAACGGATACAATCCGTAATTTGGCTCGGCTCTAAGAGCAAACTCCGAATCCGTAATCTGGCTCTAAGAGCAAACTCCTCTGTATCAAAGGAGATATGGACGGATAGAATCCGTAATCTGGCTCTAAGAGCAAAAACTCCTCCCTATGAAAGGAGATATGGACGGATAGATGACTATTTGAAGGGAGGCTCGTTTGTGGTACTTTGTTCGAGGGGAGGATTGTTGGGAATTGGGAGTGCAACCAAAGTCCCACATTGGCTAGATAAGGGGATGATCATGGCCAACAGAGACAATCCTCTCAAAGATACTTCCGGAATCTTCACAATTTCCAAAGATGGTAATCTTGTCGTCTTGGATGGAAACGACACTGTCGTTTGGTCTTCAAATGTTTCTTCTTCTGCAGCCAACATAAGCGCCCGAATTTTAGATTCAGGTAACCTTGTTTTGGAAGACACTGCTTCCAAGATGGTTATATGGGAGAGTTTCAAACACCCTTCTGATAAATTTTTAATTTTCATGAAATTGATGACAAACGCAAAAACTAATGAGAAGGTGGAAATTACCTCATGGAACAACCCTTCCGATCCATCTAAGGGAAGCTTCTCTGCAGGGCTGAATGTTCTTCACAATCTTCCCGAAGCTGTTATTTGGAATGGCCATAACACGTATTGGCGATCTGGTCCATGGAATGGTCGAATTTTTATCGGAATACCCGACATGGATTCTATTTATCTCGCTGGATACAACATCGTTGTTGAAGGTCAAACTTACTATTTTTCCTTCACTTTTAATGACGATACACAAGTTGGTTACTTATTTTTAAGCTCGCAAGGGAATCTGCAACAAATGTACTCGGATGTTGAGGAGAAGCGTTGGGTGGCTAATTGGGTGGCTATACAAACGCAGTGTGATTACTATGGTACTTGTGGTGCATTTGGAATCTGTAATGCAAAAGCATCTCCTGTTTGCAGCTGTTTAAAAGGGTTCAAACCGAAGCATGAAGATGAATGGAATCGAGGAAATTGGAGGGGTGGATGCGTGAGAGACAAGCCCTTGCAGTGTGAGAAGTTGAACAACACTAGCAGCACTGAGGAAGATGGATTTTTTAAAGTTGAAATGGTTAAAGTTCCATTTTTGGCAGAATGGCTTGATTCCGTCGTTTCAATAGATGATTGTAGAGTCAAATGCTTGGCGAATTGTTCGTGCAGTGCTTATGCTTATGACAATGGTATTGGTTGTATGCTCTGGAGTGGAGACTTAATTGATATACAGAAGTTTGAGAGCGGTGGAGCTGATCTATACCTTCGAATGCCATTTGCAGACTTGGATCATACAAAAGATGTAAGAGACAGAAAGGGAATTATTTTAGCCATAGTGCTACCAGTCATTTTTATCATCTTCATCCTTGTCATATATTTTTGGTGCAGATGGAAGACTCGTAAACAAGCAGAGAAAAACAGATCAACTCTGACTTCAAGTGAAAAGGAAAAGATTTTAAAGTTGAGAAAGGAAGATTTGATTGAAGATGAAGTGAAATTGGAGGAGCTGCCTCTTTATGATTTTGAGAAGTTAGCAATTGCAACAGACAACTTTGATTTAAGCAACAAGTTAGGACAGGGTGGCTTTGGTCCAGTATATAAAGGAAAATTGTTAAATGGACCAGAAATAGCAGTAAAGAGGCTTTCAAGAATCTCTAATCAAGGGTACGAAGAATTTATAAATGAAGTGAGGGTGATTTCAAAGCTACAACATAGGAATCTTGTGCAGCTTCTCGGTTGTTGCGTTGAAGGAGATGAGAAGATGTTAATATATGAATACATGCCAAATCTAAGTTTGGATGCATTAATCTTCGGCTCCTCCAAGCAAAAACTAATTTTGGATTGGCGGAAGCGATACAATGTCATTGATGGAATAGCTCGAGGTCTCCTTTACCTCCATCGAGATTCGAGATTGAGAATCATTCACAGAGATTTAAAGGCAAGTAATATTCTATTAGACAAAGATTTGAATCCTAAAATCTCAGATTTTGGCATGGCAAGGATTTTTGGTGGTAATGAAGTTCAAGCAAACACTTTAAGAGCCTGGAAGTTATGGGTGGAAGGCAATCTTATTCCTTTGATTGAACCAACCATATACGAATTGTGCCATCAATCAGAGATTTTGAGATGCATCCATGTAGGGCTCTTATGCATTCAAGAATATATAGATGATCGGCCAAATGTCTCTACCATTATCTCAATGATCAATAGTGAAATTGTAGATCTTCCTTCTCCAAAGCAACCCGGCTTTCTTAGCCGACCACCAGAAAGTAATAACACAGCATCATCCGAACAAAATTTAGATAAGTATTCTCAAAATAATCTTACACTTACCGCAATTATACCCCGATAA 2508 40.03 MGEICNLALRAKTPPYERRSGQIIRNLALRATPPYERRSERIQSVIWLGSKSKLRIRNLALRANSSVSKEIWTDRIRNLALRAKTPPYERRYGRIDDYLKGGSFVVLCSRGGLLGIGSATKVPHWLDKGMIMANRDNPLKDTSGIFTISKDGNLVVLDGNDTVVWSSNVSSSAANISARILDSGNLVLEDTASKMVIWESFKHPSDKFLIFMKLMTNAKTNEKVEITSWNNPSDPSKGSFSAGLNVLHNLPEAVIWNGHNTYWRSGPWNGRIFIGIPDMDSIYLAGYNIVVEGQTYYFSFTFNDDTQVGYLFLSSQGNLQQMYSDVEEKRWVANWVAIQTQCDYYGTCGAFGICNAKASPVCSCLKGFKPKHEDEWNRGNWRGGCVRDKPLQCEKLNNTSSTEEDGFFKVEMVKVPFLAEWLDSVVSIDDCRVKCLANCSCSAYAYDNGIGCMLWSGDLIDIQKFESGGADLYLRMPFADLDHTKDVRDRKGIILAIVLPVIFIIFILVIYFWCRWKTRKQAEKNRSTLTSSEKEKILKLRKEDLIEDEVKLEELPLYDFEKLAIATDNFDLSNKLGQGGFGPVYKGKLLNGPEIAVKRLSRISNQGYEEFINEVRVISKLQHRNLVQLLGCCVEGDEKMLIYEYMPNLSLDALIFGSSKQKLILDWRKRYNVIDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDLNPKISDFGMARIFGGNEVQANTLRAWKLWVEGNLIPLIEPTIYELCHQSEILRCIHVGLLCIQEYIDDRPNVSTIISMINSEIVDLPSPKQPGFLSRPPESNNTASSEQNLDKYSQNNLTLTAIIPR 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42328488 42341073 - Maker00036641 Lcy5g1952 633767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1952 835 Gene3D - 100 202 IPR036426 -
Lcy5g1952 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1952 835 SMART ntp_6 402 476 IPR003609 -
Lcy5g1952 835 SMART blect_4 98 204 IPR001480 -
Lcy5g1952 835 ProSiteProfiles PAN/Apple domain profile. 393 477 IPR003609 -
Lcy5g1952 835 Gene3D Phosphorylase Kinase; domain 1 529 645 - -
Lcy5g1952 835 Gene3D Transferase(Phosphotransferase) domain 1 646 739 - -
Lcy5g1952 835 PIRSF SRK 728 835 IPR024171 GO:0004674(InterPro)
Lcy5g1952 835 PIRSF SRK 119 733 IPR024171 GO:0004674(InterPro)
Lcy5g1952 835 Pfam D-mannose binding lectin 132 229 IPR001480 -
Lcy5g1952 835 SUPERFAMILY Protein kinase-like (PK-like) 556 822 IPR011009 -
Lcy5g1952 835 MobiDBLite consensus disorder prediction 803 819 - -
Lcy5g1952 835 FunFam receptor-like serine/threonine-protein kinase SD1-8 542 645 - -
Lcy5g1952 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 126 269 IPR036426 -
Lcy5g1952 835 MobiDBLite consensus disorder prediction 798 819 - -
Lcy5g1952 835 CDD PAN_AP_plant 390 477 - -
Lcy5g1952 835 SMART serkin_6 570 792 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1952 835 Pfam S-locus glycoprotein domain 263 371 IPR000858 GO:0048544(InterPro)
Lcy5g1952 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 646 736 - -
Lcy5g1952 835 ProSiteProfiles Bulb-type lectin domain profile. 90 201 IPR001480 -
Lcy5g1952 835 Pfam PAN-like domain 402 462 IPR003609 -
Lcy5g1952 835 Pfam Protein tyrosine and serine/threonine kinase 572 721 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1952 835 ProSiteProfiles Protein kinase domain profile. 570 835 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1952 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 132 801 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1952 Lcy-Chr5:42328488 Lcy5g1955 Lcy-Chr5:42395034 1.39E-262 dispersed
Lcy5g1951 Lcy-Chr5:42324206 Lcy5g1952 Lcy-Chr5:42328488 5.32E-28 tandem
Lcy5g1952 Lcy-Chr5:42328488 Lcy5g1953 Lcy-Chr5:42349957 0 tandem
Lcy12g0707 Lcy-Chr12:8921854 Lcy5g1952 Lcy-Chr5:42328488 1.49E-26 transposed
Lcy5g1952 Lcy-Chr5:42328488 Lcy9g1373 Lcy-Chr9:38561558 2.83E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65953 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1952 - - - 0.0