Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1953 ATGAAACTCAAAAAGAATTGCAGCTTTTCATCTCGCCTTCTTCTTCTTCTTCTTTCATTTACATGCTTCTCTTCAAGATTTTGCTTTGGCAACGACACCATCACATCAACAAATTTCATCAAAGACCCTGCAACCATTATATCCAGTGGCAGAGTCTTCACGTTGGGATTCTTCACCCCTGTTAATTCTACCCGCCGATATGTCGGAATTTGGTACGAAAAGATTTTCCCACAAACTCTGGTATGGGTCGCCAACAGAGACAATCCTCTCAATGACACTTCTGGAATCTTCACTGTTTCCAAGGATGGGAATCTTGTCGTCTTAGATTCAAACAACAGCACCCTTTGGTCTTCAAATGTTTCTTCCTCTGCATCCAACAGAAGCGCCCGAATTTTAGATTCGGGCAACCTTGTTTTGGAAGATGCTACTTCCGGGATGGTTATATGGGAAAGTTTCAAACACCCTTCTGATAAATTCTTGACTTCAATGAAAATTATGACAAACGCCAGAACTAAAGAGAAGGTTGAGTTTGTCTCATGGACCTCGCCTTCTGATCCATCTACAGGAAAATTCTCCTTTGTGTTGGATGTTGAGAACATTCCTGAAGTTGCCATTTTGAACGGCCCCAACACTTATTGGCGGTCTGGTCCATGGAACGGTCAGTCTTTTATTGGAATTCCTGAAATGAGCTCTACTTATCTCACTGGGTATAACCTCGTAATCGAAGACCAAACTTACACGCTATCTCTTGCTTATACTTACGACATTCGAGAATTTGCTTATTTGTTTTTAAGCTCTGAAGGGAATATTGAGCAAACGAATTGGGATGTTGAGAAGGAGCAGTGGGTGGCTAGTTGGTTGGCTCGAAAAACAGAGTGTGATTTCTATGGAACTTGTGGGGCTTTTGGGATTTGTAATGCAAAAGCATATCCTGTTTGCAGTTGTTTAAGAGGGTTTAAGCCAAAGCAGGAAGAGGAGTGGTATCGAGGAAATTGGAGTGGTGGATGTGTGAGAAAGACGTCGTTGAAGTGTGAGAAGTTGAACAACTCTAGCTCTGAGGAAGATGGGTTTTTGAAAATGGAAATGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCATCTGCTTCAATCGATGATTGCAGACGCGAGTGCATGGGGAATTGTTGGTGCAGTGCTTATGCATATGAAAATGGCATTCGTTGCATGCTATGGAGAAGAGACTTGATTGATATACAAAAGTTTGAGAGTGGCGGAGCTGATCTTTACATTCGAATGGCACATGCAGATTTAGATACAAATAGTGTAAGAGGCAAGAAAGGAATTGTTATTATTATCGCCATAGTGCTACCAGCAACAGCAACGCTTGTCATCTTCATCATTGCCATATACTTTTGGTGGAAATGGAAGACTAACAAAAACGATAAGAAGATAACTATGATCTCTAGTGAAAAAGAAAAGATTTTGAAACAGACAAGGTATAGTGATATGGTTGAGGATGCAGTCAAACTTGAGGAGCTACCTCTTTATGATTTTGAGAAGCTAGCAATTGCAACAAACAACTTTGATTTAAGAAACAAGCTTGGACAGGGTGGCTTTGGTCCAGTATATAAGATAGAGTTTTATTTTCAGGGAAAATTGGTAGATGGACAAGAAATAGCTGTAAAGAGGCTTTCAAGAGCCTCGAATCAAGGATATGAAGAATTTATAAATGAAGTGAGAGTGATCTCAAAACTACAACATAGAAATCTTGTGCGACTTTTTGGTTGTTGCATCGAAGGAGAAGAGAAGACGTTAGTATATGAGTATATGCCTAACCTAAGTTTGGATGCGTTAATCTTTGGCTCTCCCAAACACGAACTTTTGGATTGGAGAAAAAGATTTAATATTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAAAATCATTCATAGAGATCTCAAGGCAAGTAATATTTTGTTAGACAAAGATTTGAATCCTAAAATTTCAGACTTCGGCATGGCAAGAATTTTTTGTGGCAACGAAGTTCAAGCAAACACTTTAAGAATTGTTGGAACTTATGGATATATGTCTCCTGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTAATACTTGAAATTATAAGTGGGAAAAGAAATACAGGATTCTACCACCATGAAAACGTGATAAGCTTATTGGAACTTGTATGGAAATTGTGGATGGAAGACGATCTTATTCCATTGATTGAACCAACGGTGTATGAATTATGCTACCAATCAGAGATTTTGAGATGCATTCACGTGGGACTCTTATGTGTTCAAGAACTTAGAGATGATAGGCCAAATGTTTCCACTATCATCTCAATGCTTAATAGTGAAATTGTTGATCTTCCATCTCCAAAGCAACCTGGCTTTGTTGGTAGACCACATGAAAGTAGAACAGGATCATCCCAACAAAGTTTAGATAAATTTTCTGTAAATAGTGTTACACTAACCACTGTTACAGCTCGATAG 2541 38.8 MKLKKNCSFSSRLLLLLLSFTCFSSRFCFGNDTITSTNFIKDPATIISSGRVFTLGFFTPVNSTRRYVGIWYEKIFPQTLVWVANRDNPLNDTSGIFTVSKDGNLVVLDSNNSTLWSSNVSSSASNRSARILDSGNLVLEDATSGMVIWESFKHPSDKFLTSMKIMTNARTKEKVEFVSWTSPSDPSTGKFSFVLDVENIPEVAILNGPNTYWRSGPWNGQSFIGIPEMSSTYLTGYNLVIEDQTYTLSLAYTYDIREFAYLFLSSEGNIEQTNWDVEKEQWVASWLARKTECDFYGTCGAFGICNAKAYPVCSCLRGFKPKQEEEWYRGNWSGGCVRKTSLKCEKLNNSSSEEDGFLKMEMVKVPFLAEWSNSSASIDDCRRECMGNCWCSAYAYENGIRCMLWRRDLIDIQKFESGGADLYIRMAHADLDTNSVRGKKGIVIIIAIVLPATATLVIFIIAIYFWWKWKTNKNDKKITMISSEKEKILKQTRYSDMVEDAVKLEELPLYDFEKLAIATNNFDLRNKLGQGGFGPVYKIEFYFQGKLVDGQEIAVKRLSRASNQGYEEFINEVRVISKLQHRNLVRLFGCCIEGEEKTLVYEYMPNLSLDALIFGSPKHELLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFCGNEVQANTLRIVGTYGYMSPEYAMQGQFSEKSDVFSFGVLILEIISGKRNTGFYHHENVISLLELVWKLWMEDDLIPLIEPTVYELCYQSEILRCIHVGLLCVQELRDDRPNVSTIISMLNSEIVDLPSPKQPGFVGRPHESRTGSSQQSLDKFSVNSVTLTTVTAR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42349957 42353146 - Maker00036500 Lcy5g1953 633768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1953 846 CDD B_lectin 37 155 IPR001480 -
Lcy5g1953 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 220 IPR036426 -
Lcy5g1953 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1953 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 813 - -
Lcy5g1953 846 ProSiteProfiles Protein kinase domain profile. 522 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1953 846 CDD PAN_AP_plant 340 427 - -
Lcy5g1953 846 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Lcy5g1953 846 Pfam Domain of unknown function (DUF3403) 801 846 IPR021820 GO:0004674(InterPro)
Lcy5g1953 846 Gene3D Phosphorylase Kinase; domain 1 480 603 - -
Lcy5g1953 846 SUPERFAMILY Protein kinase-like (PK-like) 497 799 IPR011009 -
Lcy5g1953 846 PIRSF SRK 4 846 IPR024171 GO:0004674(InterPro)
Lcy5g1953 846 SMART ntp_6 352 426 IPR003609 -
Lcy5g1953 846 Gene3D - 28 153 IPR036426 -
Lcy5g1953 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 152 - -
Lcy5g1953 846 Pfam PAN-like domain 351 412 IPR003609 -
Lcy5g1953 846 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Lcy5g1953 846 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Lcy5g1953 846 CDD STKc_IRAK 528 800 - -
Lcy5g1953 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Lcy5g1953 846 Pfam Protein tyrosine and serine/threonine kinase 524 743 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1953 846 SMART serkin_6 522 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1953 846 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544(InterPro)
Lcy5g1953 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 485 603 - -
Lcy5g1953 846 SMART blect_4 37 155 IPR001480 -
Lcy5g1953 846 Pfam D-mannose binding lectin 79 180 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0402 Lcy-Chr1:3574770 Lcy5g1953 Lcy-Chr5:42349957 5.94E-231 dispersed
Lcy5g1949 Lcy-Chr5:42303469 Lcy5g1953 Lcy-Chr5:42349957 2.71E-71 dispersed
Lcy5g1950 Lcy-Chr5:42317982 Lcy5g1953 Lcy-Chr5:42349957 1.73E-197 dispersed
Lcy5g1951 Lcy-Chr5:42324206 Lcy5g1953 Lcy-Chr5:42349957 6.30E-29 dispersed
Lcy5g1953 Lcy-Chr5:42349957 Lcy5g1955 Lcy-Chr5:42395034 0 dispersed
Lcy5g1952 Lcy-Chr5:42328488 Lcy5g1953 Lcy-Chr5:42349957 0 tandem
Lcy5g1953 Lcy-Chr5:42349957 Lcy5g1954 Lcy-Chr5:42382457 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65954 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1953 - - - 0.0