Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1954 ATGAGAGAAGTGAGGCTGGGAAAGAATTTTCGGGAAATTCGTCACATTTCCAATGCCAGTTCTTTCGAGTTGGGATTCTTCACACCCGTGCCGAACAAAGAAGTTGTGAGCCTTGAAGTAGTCATGGGGAAATCCGTTGTTGAGCTTTGGGCAGGACTCTTGGATGGAAACCTTGTCGTCTTGGATGGAAACAGCACTGTCATTTGGTCTTCAAATGTTTCTTCCTCTGCAACCAACACAAGCGCCCGAATTCTAGACACCGGTAACCTTGTTCTGAAAGATATTGCTTCCGGCCTGATTATATGGGAGAGTTTCAAACACCCTTCTCGTGCATACTTGTCTTCCATGGCATTGATCACAAATACAAGAACCAATCAGGAAGTTGGGCTTACCTCATGGAGAAGCCCTTCTGATCCATCCATAGGTAACTTCTCATTGACACTGTTCGTCTACAATATTCCTGAAACTGTTATTTGGAATGGCCGTGACCCATATTGGAGGTCTGGTCCATGGGACGGCCAGACATTCATCGGAGTGCCCAAAATGAAATCTGTTTATCTCTATGGAAATAGCCTCGAAATCCAAGACCAAACTTACCGTCTCACCAATGGCCAACAGTCCACGTACTTAATTTTGAGCTCGCGGGGGAATGTGGAGCTAATGGAGTGGGATGTCTCGGAGGAGCAATGGAAGGTTGCCTGGTCGGCTCCACAGACGCAGTGTGATTACTATGGTGCTTGTGGGGCGTTTGGGATTTGTGATATGAAATCGTCTCCAATTTGCAGTTGTTTGAGAGGGTTCAAGCCAGAGCATGAAGAGGAATGGAGCCGTGGGAATTGGAGTGGTGGATGTGTGAGAAATACGCCATTGAAATGTGAGAAGTGGAACAAAACTGGTGTTGAGGAAGATGGGTTTTTGAAGTTGGAAATGGTTAAAGTGCCATTTTATACAGAGTGGTTCAATTCCTCTGTTTCGGTAGATGACTGTAGACGTGAGTGCTTGAAGAATTGTTGGTGTAGAGCTTATGCATATGAGAATGGTATTCTTTGCATGCTATGGAGAAGAGACTTAATTGATATAAAGAAGTTTGAGAGCGGTGGAGCTGATCTTTACCTTCGAATGGCATACGCAGATTTGAATACAAGTACACCCTCTGTAAACTTCTCTACTGCAATTTTTTCATCATTGAAGAATGCAAAGATAGACAGAAGCAAGATGTCCTTATTCAACGAATTAAGGGGAAATTTTTTGAACTTGACGATGGGTCAAAGATTTGGTGACAATCTGAACCAAGAGTTATCAACTTATGACTTCGAGAAGCTAGAAATTTCGACAAACCATTTTCATTTAGATAACAAGCTTGGAGAAGGTGGATTCGGTCCAGTGTATAAGGGGAGATGGGTGGATGGACAAGAAATAGCTGTGAAAAGACTCTCAAGAGTCTCTAATCAAGGGCTCGAAGAATTTTTAAATGAAGTGACAGTCATTTCAAAACTCCAACATCGAAATCTTGTTCGACTTTTCGGTTGCTGCGTTGAAGATTCCTCCAAACAAAAACTCTTAGATTGGAGAAAAAGGTTCAACATCATTGTGGGAATTGCACGAGGTCTGCTTTACCTTCACAAAGATTCTAGATGGAAGATTATCCATAGAGATCTAAAAGCAAGCAATATTCTATTGGATGAGAATTTTAATCCCAAAATTTCAGATTTTGGTATGGCACGAATTTTTGACAACGATGAAAATCAAGCAAATACTATAAGAGTTGTTGGAACTTATGGCTACATGTCTCCCGAATATGCAATGCAAGGTCGATTCTCAGAGAAATCAGACGTATTTAGTTTTGGAGTTCTGTTGCTTGAAATTATTAGTGGGAGAAGAAATACAAGTTTTTGCCACGATGAAGATGTCTCAAGCCTATTAGGACTGGCTTGGAAATTATGGAACGAAGAGAATTTAATTTCTTTGATTGATCAAGCAATATATGGCTCGTGCCATCACACAGAGATGCTGAGATGCATCCATATAGGACTCTTGTGCGTTCAAGAAGTCGTAAAGCATAGGCCAGATATGTCGACCATTCTTTCAATGCTTAATAGTGAAATCATAGATCTTTATCCTCCGAAACAGCCTGGGTTTACAAACATTCAATTTGAGGGTCATACAAATTTATCTCAACATAGTTGGGATAAACGTTCTGTAAATATGGTTACAGTTACCAAGATTGAGGGACGATAG 2238 41.24 MREVRLGKNFREIRHISNASSFELGFFTPVPNKEVVSLEVVMGKSVVELWAGLLDGNLVVLDGNSTVIWSSNVSSSATNTSARILDTGNLVLKDIASGLIIWESFKHPSRAYLSSMALITNTRTNQEVGLTSWRSPSDPSIGNFSLTLFVYNIPETVIWNGRDPYWRSGPWDGQTFIGVPKMKSVYLYGNSLEIQDQTYRLTNGQQSTYLILSSRGNVELMEWDVSEEQWKVAWSAPQTQCDYYGACGAFGICDMKSSPICSCLRGFKPEHEEEWSRGNWSGGCVRNTPLKCEKWNKTGVEEDGFLKLEMVKVPFYTEWFNSSVSVDDCRRECLKNCWCRAYAYENGILCMLWRRDLIDIKKFESGGADLYLRMAYADLNTSTPSVNFSTAIFSSLKNAKIDRSKMSLFNELRGNFLNLTMGQRFGDNLNQELSTYDFEKLEISTNHFHLDNKLGEGGFGPVYKGRWVDGQEIAVKRLSRVSNQGLEEFLNEVTVISKLQHRNLVRLFGCCVEDSSKQKLLDWRKRFNIIVGIARGLLYLHKDSRWKIIHRDLKASNILLDENFNPKISDFGMARIFDNDENQANTIRVVGTYGYMSPEYAMQGRFSEKSDVFSFGVLLLEIISGRRNTSFCHDEDVSSLLGLAWKLWNEENLISLIDQAIYGSCHHTEMLRCIHIGLLCVQEVVKHRPDMSTILSMLNSEIIDLYPPKQPGFTNIQFEGHTNLSQHSWDKRSVNMVTVTKIEGR 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42382457 42387158 - Maker00036156 Lcy5g1954 633769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1954 745 Pfam D-mannose binding lectin 55 134 IPR001480 -
Lcy5g1954 745 SMART blect_4 7 108 IPR001480 -
Lcy5g1954 745 ProSiteProfiles Protein kinase domain profile. 448 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1954 745 Gene3D Transferase(Phosphotransferase) domain 1 516 706 - -
Lcy5g1954 745 PIRSF SRK 3 745 IPR024171 GO:0004674(InterPro)
Lcy5g1954 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1954 745 ProSiteProfiles PAN/Apple domain profile. 292 375 IPR003609 -
Lcy5g1954 745 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 172 IPR036426 -
Lcy5g1954 745 SUPERFAMILY Hairpin loop containing domain-like 316 371 - -
Lcy5g1954 745 SMART ntp_6 300 374 IPR003609 -
Lcy5g1954 745 ProSiteProfiles Bulb-type lectin domain profile. 1 105 IPR001480 -
Lcy5g1954 745 Gene3D Phosphorylase Kinase; domain 1 430 515 - -
Lcy5g1954 745 CDD PAN_AP_plant 288 375 - -
Lcy5g1954 745 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 505 706 - -
Lcy5g1954 745 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 421 524 - -
Lcy5g1954 745 SUPERFAMILY Protein kinase-like (PK-like) 432 698 IPR011009 -
Lcy5g1954 745 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 713 - -
Lcy5g1954 745 Gene3D - 13 106 IPR036426 -
Lcy5g1954 745 Pfam PAN-like domain 301 360 IPR003609 -
Lcy5g1954 745 Pfam Protein tyrosine and serine/threonine kinase 449 697 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1954 745 SMART serkin_6 448 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1954 745 Pfam S-locus glycoprotein domain 166 270 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1954 Lcy-Chr5:42382457 Lcy6g1267 Lcy-Chr6:15708705 1.77E-186 dispersed
Lcy5g1953 Lcy-Chr5:42349957 Lcy5g1954 Lcy-Chr5:42382457 0 tandem
Lcy5g1954 Lcy-Chr5:42382457 Lcy5g1955 Lcy-Chr5:42395034 2.44E-306 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65955 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1954 - - - 0.0