Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1955 ATGGAACCCATCAGCAACACCATTCCGTTAATCCTTCTTCTTTGCTTCGTTTTGAAAGTTTCCGGCAGCATAGATACGATCACATCCACACAATTCCTCAAAGACCCCGAAACTCTATTGTCCAATCGTGGCTTCTTCGAATTGGGTTTCTTCAGCCCTCTCAATTCGACCAGTCGGTTCGTCGGAATTTGGGATAAACGAGTTCCTGTACGAACTGTCTTCTGGGTAGCTAACAGAGACAAACCTCTCAACAACAAATCCGGGGTTTTCGCCGTTTCCCAGGACGGGAATCTCGTTGTACTAGACGAACAGAACAAAGTTCTTTGGAATTCGAATGTTTCAAACGCTGCAGCGAATTCCACCGCTCGGCTTCTAGATTCTGGATACCTTGTTCTGCAAGACCCTGCTTCAGGAACCATCATATGGGAGAGTTTCAAAGACCCATCAGACAAATTCTTGCCAATGATGAAATTCATCACGAACACGATCACAAAGGAGAAAGTAGAACTCGTGTCGTGGAAAAGCCCTTCGAATCCATCTTCAGGAAATTTCTCCTACGGAATCGACCCTCTGTCAGTAATCCCTCAAGTTGTTATTTGGAAAAACGGCCGCCCGTATTGGAGGTCCGGTCCATGGGACGGCCAAGTTTTCATCGGAATACCCGGCATGAGCCCTGACTATCTTCAAGGAGGTAGTATCGTAATCGAAAACAGAACTTACACTCTCTCAGTCACCAATGCAAACGAAACTCAGTTATTCTTCCATTACTTGAACCCCAATGGGGCTTTGGAAGAGAATCAATGGGATACTGAGGAGCAGAAATGGGAGGTTGTGTGGTCAGCCCCCGAAACAGAGTGTGGTGTTTATGGCGCTTGTGGAGCATTTGGAGTCTGTGACTCTCAGAAAACCCCAATTTGCAGTTGTTTGAAGGGGTTTAGGCCAGAGAATGAAGAGGAATGGAACAGAGGAATTTGGAGAAGTGGGTGTGTGAGGAATTCGCCATTGGAGTGTGAGAGGAAGAATATCAGTGTTGAAATGGGAAAAGAGGATGGGTTTTTGAAGGTGGGAATGGTTAAAGTTCCAGATTCTGCAGCTTGGTTTGTTGCTTCAACAGGGATTGGTTGTATGATATGGAGAGGAGGTTTGATTGACATTGAAAAGTTCAAGAATGGTGGAGCGGACATTAATGTTCGTGTGGCATATTCAGACATAGTTGATGAAAGTGGAGCCACCAAAGATATGAAAGCAGTAATCATAGCTTCTGTTGTAGCAGGAACTTTTACCCTTATATGCTGCATATATTGCTACTGGAAAAGGAGAAGTAAAAGCCAGATGAAGATTTGGTTCAACACTGGGGATATGAAGCATGATAAAATGGATCAAGTTAAGCTCCAGGAGTTGCCTCTTTTTGGTTTTGAGAAGCTGGCAACTGCAACTGACCACTTTCATTTCAAGAACAAGCTTGGTCAGGGCGGGTTTGGTCCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGGCTTTCAAGGACATCAGGACAAGGGCTTGAAGAGTTTACGAATGAAGTAATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGGTGTTGTGTGGAGGGAGAAGAAAGAATGCTAGTATATGAGTACATGCCCAATGGAAGTTTGGATTCAATTGTTTTTGATTCAACCAAAGGAAAAATTTTGGATTGGCAAAAAAGATTCAACATCATTGAAGGGATTGCTCGAGGACTCCTATATCTTCATAGAGATTCAAGGTTAAAGATCATTCATAGAGATCTCAAAGCTAGTAACATTTTACTAGATAGAGATTTAAATCCCAAGATTTCAGATTTTGGCACCGCAAGAATTTTTTACGGCAATGAAGCTCAAGCCAATACCACAAGGGTTGTGGGCACTTACGGCTACATGTCTCCTGAATACGTGATGAAAGGTCAATTCTCAGAGAAATCTGATGTCTTTAGCTTTGGTGTTTTATTGCTTGAAATTATTAGTGGAAGGAAGAATACAAATTTTCATCATAATGAACATATCTCGAGCCTTTTGGAATTTGCATGGAAATTATGGATGGAAGATAATTTAGGTCCTTTGATTGATCAAACAATGACCGAATCACATTATCAAATAGAGATTTCAAGAAATATCATCACATCAATCAGTTTCATCACAGACCCTTCAACTCTGTTATCCGACAACAATTTCTTCGAGTTGGGGTTTTTCAGCCCTGTTAATACAACGAGCCGATATGTCGGAATCTGGCCCAACCAAGGTTCCGACCGAACTGTCGTATGGGTAGCTAACAGAGACAACCCTCTAAACGATTCTTCTGGGGTTTTCACCATTTCCAAGGACGGAAATCTTGTTGTATTAGACGGAAAGAGCAACATTCTTTGGTCTTCAAACCTTCTAAAACCTGCAATCAACTCGACTGCTCTGCTTTTAGATTCTGGCAACCTTGTTCTACGAGACTCTGCTTCCGGGATGATTCTATGGGAGAGTTTCAAAAACCCCTCTGATTCTTTCTTGCCAGGCATGAAATTTGTCGCAAACACAATAACTAAAGAGAAAATAGGGCTGATGTCGTGGAAAAGTCCTTCTGATCCATCGAAAGGGCGTTTCTTCTTCGGCATCGATGCTGTAAATAACATTGCCGAAACTTGCATTTGGGAAGGCAGTGATCTGCGTTGGAGATCTGGTCCATGGAATGGGCAATCCTTCATTGGCATACCCCACATGGAGTCCGTTTATTATCTCCTTGGTTTCAGTCTCCTAATTGAAAACCGATCTTACTATCTATCAGCCGCAACTAGCAATGAGCTGCTCCCATATGAGTTTTATCAGCTAACCTCACAGGGGAATTTTCAGCAATCGTATTGGGATGATACGTGGAAGGACTGGAGAATTGGATGGTCGGCTCTAAAAACGGTGTGTGATTCCTACGGAAGTTGTGGGGCTTTTGGAATCTGTGACCCAAAATCATCTCCTGTTTGCAGTTGTTTAAAAGGGTATCAGCCGAAGAACGAGGGGGAATGGAATCAAGGAAATTGGGGAAGTGGGTGTGTGAGAAAGACATTGTTCGAGTGTGAGAAAGTGAAAAATGTGAGTGTTGAACAAGGCAAGGAAGATGGATTTTCGAAAGTGGAAACGGTTAATTTACCACACTTTGCAAAGTCGTTGAGTTCCTCTGTTTCAGCCGATGGTTGCAGGGCTAAGTGCTTGGATGATTGTTCGTGTTCTGCTTATGCGTATGAAAATGGCATTGGGTGCATGTTATGGAGTGGGAATTTGATCGACGCTCGAAAGCTCGATTTTGGTGGAGACACAGAGGATGCTGTAAAAGGATCAAAAGTGATTATTATAGCTTCAGTAATAGCTGGAACTGGAACACTAATCATCATCTTCATCATATGTGTCTCATGGAGAAGGATAACTGGCCAAAAAGCAAAGGAAGAGGGAACATGCAAGAAGATTTCATTGTTAAACGAGAGACGTAAAATTTTGAACTTGACAACGGATCACAGAATTGGAATCAATTTGAATCAAGAGTTACCAACTTATGAGTTTGAGAAGCTGGCAATTGCAACAAACAATTTTCATTCAGATAACAAGCTTGGAAAGGGAGGGTTTGGGCCAGTGTATAAGGGAAGGTTGGTGGATGGCCAAGTAATAGCTATAAAAAGACTCTCAAGAGCGTCTAATCAAGGACTTGAAGAATTTATAAATGAAGTAACAGTGATTTCAAAACTCCAACATCGAAATCTTGTTCGACTCTTTGGTTTTTGTGTCGAAGGAGAAGAGAAGATGTTGATATATGAGTACATGCCAAACCTAAGTTTGGATGCATTTATCTTTGATTCCTCCAAACGAAAGCTGTTAGATTGGAGAAAAAGGTTCAAAATCATCCTGGGGATTGCACGAGGCCTTCTTTATCTTCACACGGATTCTAGATTGAAGATCATTCATAGAGATCTCAAGGCGAGTAACATCCTATTGGACGAGAATCTTAATCCCAAAATTTCAGATTTTGGTATGGCACGAATTTTCGGCAACAATGAAGATCAAGCAAATACTTTAAGAGTCGTTGGAACTTATGGCTACATGTCTCCTGAATACGCAATGGAAGGTCGATTTTCAGAGAAATCAGATGTATTTAGCTTTGGAGTTCTGTTGCTTGAAATAATTAGTGGGAGAAAGAATACAAGTTTTTACCATGACGAGAATGTACTAAGCCTATTAGGACTGGCATGGAAATTATGGAATGAAGAGAATCTAATTGCTTTCGTTGATCAAGAAATCCATGACTCGAACCATCACACAGAGATTTTGAGATGCATACATATAGGACTCTTGTGTGTTCAAGAAGCCATAAAGGATAGGCCAAATATGTTGACCATTCTTTCAATGCTTAATAGTGAAATTATAGATCTTCATCCTCCAAAACAACCTGGCTTTACTAGCCTGCAATTCGAGAGCAGTACAGATTCATCTCAACAAAGTGAGCATAAATATTCTATAAATATGGTTACAATTACCAAGATTGGAGGACGGTAG 4593 41.37 MEPISNTIPLILLLCFVLKVSGSIDTITSTQFLKDPETLLSNRGFFELGFFSPLNSTSRFVGIWDKRVPVRTVFWVANRDKPLNNKSGVFAVSQDGNLVVLDEQNKVLWNSNVSNAAANSTARLLDSGYLVLQDPASGTIIWESFKDPSDKFLPMMKFITNTITKEKVELVSWKSPSNPSSGNFSYGIDPLSVIPQVVIWKNGRPYWRSGPWDGQVFIGIPGMSPDYLQGGSIVIENRTYTLSVTNANETQLFFHYLNPNGALEENQWDTEEQKWEVVWSAPETECGVYGACGAFGVCDSQKTPICSCLKGFRPENEEEWNRGIWRSGCVRNSPLECERKNISVEMGKEDGFLKVGMVKVPDSAAWFVASTGIGCMIWRGGLIDIEKFKNGGADINVRVAYSDIVDESGATKDMKAVIIASVVAGTFTLICCIYCYWKRRSKSQMKIWFNTGDMKHDKMDQVKLQELPLFGFEKLATATDHFHFKNKLGQGGFGPVYKGKLVDGQEIAVKRLSRTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEGEERMLVYEYMPNGSLDSIVFDSTKGKILDWQKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIFYGNEAQANTTRVVGTYGYMSPEYVMKGQFSEKSDVFSFGVLLLEIISGRKNTNFHHNEHISSLLEFAWKLWMEDNLGPLIDQTMTESHYQIEISRNIITSISFITDPSTLLSDNNFFELGFFSPVNTTSRYVGIWPNQGSDRTVVWVANRDNPLNDSSGVFTISKDGNLVVLDGKSNILWSSNLLKPAINSTALLLDSGNLVLRDSASGMILWESFKNPSDSFLPGMKFVANTITKEKIGLMSWKSPSDPSKGRFFFGIDAVNNIAETCIWEGSDLRWRSGPWNGQSFIGIPHMESVYYLLGFSLLIENRSYYLSAATSNELLPYEFYQLTSQGNFQQSYWDDTWKDWRIGWSALKTVCDSYGSCGAFGICDPKSSPVCSCLKGYQPKNEGEWNQGNWGSGCVRKTLFECEKVKNVSVEQGKEDGFSKVETVNLPHFAKSLSSSVSADGCRAKCLDDCSCSAYAYENGIGCMLWSGNLIDARKLDFGGDTEDAVKGSKVIIIASVIAGTGTLIIIFIICVSWRRITGQKAKEEGTCKKISLLNERRKILNLTTDHRIGINLNQELPTYEFEKLAIATNNFHSDNKLGKGGFGPVYKGRLVDGQVIAIKRLSRASNQGLEEFINEVTVISKLQHRNLVRLFGFCVEGEEKMLIYEYMPNLSLDAFIFDSSKRKLLDWRKRFKIILGIARGLLYLHTDSRLKIIHRDLKASNILLDENLNPKISDFGMARIFGNNEDQANTLRVVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIISGRKNTSFYHDENVLSLLGLAWKLWNEENLIAFVDQEIHDSNHHTEILRCIHIGLLCVQEAIKDRPNMLTILSMLNSEIIDLHPPKQPGFTSLQFESSTDSSQQSEHKYSINMVTITKIGGR 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42395034 42402223 - Maker00036932 Lcy5g1955 633770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1955 1530 Gene3D - 19 145 IPR036426 -
Lcy5g1955 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1177 1287 - -
Lcy5g1955 1530 Pfam Protein tyrosine and serine/threonine kinase 1214 1482 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 Pfam Protein tyrosine and serine/threonine kinase 483 721 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 ProSiteProfiles Protein kinase domain profile. 482 736 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 FunFam Liguleless narrow1 1288 1491 - -
Lcy5g1955 1530 SUPERFAMILY Protein kinase-like (PK-like) 463 724 IPR011009 -
Lcy5g1955 1530 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 731 1498 - -
Lcy5g1955 1530 ProSiteProfiles Bulb-type lectin domain profile. 727 848 IPR001480 -
Lcy5g1955 1530 SUPERFAMILY Protein kinase-like (PK-like) 1194 1483 IPR011009 -
Lcy5g1955 1530 CDD B_lectin 30 148 IPR001480 -
Lcy5g1955 1530 CDD STKc_IRAK 1218 1484 - -
Lcy5g1955 1530 Pfam PAN-like domain 1053 1112 IPR003609 -
Lcy5g1955 1530 Gene3D Phosphorylase Kinase; domain 1 1176 1287 - -
Lcy5g1955 1530 SMART blect_4 733 851 IPR001480 -
Lcy5g1955 1530 SMART blect_4 30 148 IPR001480 -
Lcy5g1955 1530 SUPERFAMILY alpha-D-mannose-specific plant lectins 776 882 IPR036426 -
Lcy5g1955 1530 FunFam receptor-like serine/threonine-protein kinase SD1-8 454 557 - -
Lcy5g1955 1530 CDD STKc_IRAK 488 724 - -
Lcy5g1955 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 145 - -
Lcy5g1955 1530 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 213 IPR036426 -
Lcy5g1955 1530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1333 1345 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 CDD B_lectin 736 851 IPR001480 -
Lcy5g1955 1530 CDD PAN_AP_plant 1053 1122 - -
Lcy5g1955 1530 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Lcy5g1955 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 723 848 - -
Lcy5g1955 1530 SMART ntp_6 1053 1129 IPR003609 -
Lcy5g1955 1530 ProSiteProfiles PAN/Apple domain profile. 1042 1129 IPR003609 -
Lcy5g1955 1530 Pfam D-mannose binding lectin 775 877 IPR001480 -
Lcy5g1955 1530 Pfam D-mannose binding lectin 72 174 IPR001480 -
Lcy5g1955 1530 ProSiteProfiles Protein kinase domain profile. 1212 1518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 Gene3D - 738 850 IPR036426 -
Lcy5g1955 1530 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544(InterPro)
Lcy5g1955 1530 Pfam S-locus glycoprotein domain 910 1021 IPR000858 GO:0048544(InterPro)
Lcy5g1955 1530 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 558 741 - -
Lcy5g1955 1530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 SMART serkin_6 482 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 SMART serkin_6 1212 1488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1955 1530 Gene3D Transferase(Phosphotransferase) domain 1 1288 1490 - -
Lcy5g1955 1530 Gene3D Transferase(Phosphotransferase) domain 1 558 737 - -
Lcy5g1955 1530 Gene3D Phosphorylase Kinase; domain 1 455 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0600 Lcy-Chr4:7200588 Lcy5g1955 Lcy-Chr5:42395034 3.81E-138 dispersed
Lcy5g1147 Lcy-Chr5:24670694 Lcy5g1955 Lcy-Chr5:42395034 2.90E-130 dispersed
Lcy5g1952 Lcy-Chr5:42328488 Lcy5g1955 Lcy-Chr5:42395034 1.39E-262 dispersed
Lcy5g1953 Lcy-Chr5:42349957 Lcy5g1955 Lcy-Chr5:42395034 0 dispersed
Lcy5g1955 Lcy-Chr5:42395034 Lcy5g1958 Lcy-Chr5:42435742 5.11E-195 dispersed
Lcy9g1394 Lcy-Chr9:38961753 Lcy5g1955 Lcy-Chr5:42395034 6.86E-82 dispersed
Lcy9g1396 Lcy-Chr9:38975458 Lcy5g1955 Lcy-Chr5:42395034 2.69E-80 dispersed
Lcy5g1954 Lcy-Chr5:42382457 Lcy5g1955 Lcy-Chr5:42395034 2.44E-306 tandem
Lcy5g1955 Lcy-Chr5:42395034 Lcy5g1956 Lcy-Chr5:42411717 1.11E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65956 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1955 - - - 0.0