Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1956 ATGGACCTCTGCCGACTAATCGCCACCGTTGGCCTCCGACTACCAGTCATTGCCGACCTTCGTCGACCGGCCGCCACCGTCAACCTCCGACTACCGGCTGCTGTGCCGCCGACTGACCACCACTGTCAACCTTCGACTACCGGTCATCGCCGACCTCCACTGACCACCCTTTGTCGACCGACCGCTGCGACCTCCGCTGGCCGTCCTCCATCGACCGATCGCCCCTGTCGACCTCCGACTATCGATCGTCGCGACCTCTATTGGTCGTCCTTCGTCGACCAACCGCCACTACCGTCAACCTTCGACCATCGGGCGCTGCCAACCGGCCGCCATCGTCGACCTTCGACTATCGACCGCCACCGACCTCCGCCGACTGACCGTCACCGTCAACCTCCATTGACTGGTTGCCACCATCAACCTCCGCCGACCGACTGTCACTGTCGACCTCTGACTAGCGACCGCCGCCGACCTCCACCGACCAGCCACCACCTGCAACCTCTGACTATAATTTTAATAGTTACGTACATAACAAAAGAGGTTAACGAGCAAGAGCATTCTTCTAAAGCTCAATACAAAGGAAATAAAGCAATGGGAAAACCAACCTCCAGGCGCTATCTTTCGTCTCTGCTCTGTTTATGGACACTGATTCCTCTGTTTTCCAGACAATCAATTGCAGCCGACAGCATAAAAGCAGGGCAATCCATCAACGACACCCAATCAATTGTTTCAGCCGCCCAAAAGTTCGAACTGGGATTCTTCACTGAACCCAAACCCTCCAATTTCAAGTATTTAGGAATATGGTACAAGGGAATTCCCGACGATGTCGTTTGGGTGGCAAACAGAGACAACCCAATTGTAAACTCCTCTGCCACTTTAACTTTCAATGGAGATGGAAACTTAATTCTCCTCAATCGAACAGGTGCAGCCTTTTGGCTTTCGAATTCGACAACATCAGTTCAAGATCCTGTCGCTCAACTGCTGGATACAGGTAATTTGGTGTTGAGAGATTCAAATTCAGGGTCTGAAAATTACCTGTGGCAGAGTTTTGATTATCCCTCCGATACTCTGTTACCGGGTATGAAACTCGGGTGGGACTCCAAAACGGGTCTGAAACGAAAGTTAATTTCCCGAAAAAGTCCAAACGATCCATCCTCTGGAGAATTCAGTTATGGCGTCGACACAGATGGGCTTCCACAAGTTGTCGTTCGTGAAGGAAACAGCACGATTGTTAGGGGCACCCCATGGTTTGGTCCCAGGTTTGCAGTGGGTCGGGCCAAACGAAGCGATCGATATATCCCAAATTTCGTCTACAATGCTTCCATTGAGATATCGTTTTCATATACTGATTCAACGAATGGTCGTTCAAGAATCGTATTGGATTCAACTGGGTTGATTACACACTTCATGTGGAGCGATTTGGCATGGCACAAAGCATACACGTTTGAAGGAACCGGCTGCAACGACTACGAAATCTGTGGAAATTTTGGGCTCTGCAGCTCTGTAGTAACAGTAAGTTGCGGTTGTTTAAATGGGTTTGAACAAAAAACAGCCCAAAACGTTTCAGATGGGTGCGTGAGAAAGGATCCAGAAATCTGCAGAGCCGGAGAGGGATTTAAAAAGATAAGTGATGTGAAATGGCCAGATTCTAGTGGGCAGTTCGTGAAAGTGAAGATGGGTATTCAAAATTGCGAGGCCGAGTGCTTGAAAAATTGTTCTTGTTCAGCCTATGGGACGCTGCAAATTCCTGAGATTGGCTTCGGCTGTGTCACGTGGTTTGACAAATTGATTGATGTTAGATTTGTTCGTGATGCTGGCACTGGGGATGATCTCTTTCTGAGAATGGCCGCTTCAGAATTAGAATCGAATTCGATTGCAAATGCAAAATCTGAGAAGAAGCGTATAGTTGCTGTGGTTGTACCTACAATTTCAGCAGTAATGTTTTTGGCCTTAATCAGCTGGATTATCATTAGAAATGTTAGAAGATCGAGAGAAACTGAGGTTCCTGTGATTGAGATTCCAATTAAAGAAATTGAACTTGAGATGCCAATGGCTTTAATTGAAGCTGCAACAGACAATTTCTCTATTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCCGTATATAAGGGCAATCTCCCATCTGGACAAGAAATTGCTGTAAAAAAACTAGCAGAAAGTTCGCATCAAGGGCAACAAGAGTTTCAAAACGAGGTCCTTCTCATTTCCCAACTTCAACATCGAAATTTGGTTAAGCTACTTGATGACGCAAGGCGTTATTTACTCAATTGGCCAATGAGAATTAATATCATAGTTGGCATAGCTCGAGGACTTCTTTATCTCCATCGAGATTCGAGACTTCGAATAGTACACAGAGATCTCAAAGCAGCCAATATTCTATTAGATTGTGAAATGAACCCGAAAATTTCCGACTTTGGCATTGCACGCATGTTTGGTGAAGATCAAATTGAAACAAAAACAAATAGAGTTGTCGGGACATATGGCTATATGTCTCCAGAGTATGCAATAGATGGTTACTTTTCGTTCAAGTCTGATGTCTTTAGCTTTGGAGTCATGCTTCTAGAAATTGTTAGCGGCAAGAAGAACAAAGGATTTTCTCATTTTGAGCATCAACTAAATCTTCTTGGACACTTCCCTCTCGATAGAAAACTCGATGCAAATCTCCCTCTCTTTCGTTTGGCTTCGTCTCTGGTAAATAACTCGAGCAAAATTTCCCTATCGTTTCGTTTCGTCTCTGGTAAAGAATTCGAGCAAAATCTCAACCAACAAGGATCCGATGGTGGAGATTATCCCTCAGAATTCTCCACTCAGTTGTCTGTCGATGTCGATGTGGCTCCAACAATGACATTGAAATTACAAATGCCCTCGGAAGAAAAGAGGTATTGTGCTCTCAAAAGTCATATTTTTCTCTCCCAAAACAGCTCCCCCATTCAGATGGCATCGCAAACAATATATACTGTCCATTCTGCGCGACAGCGTCGAGACGCTAAGGACACAGCGTCGCGACGCTGTCGCGCACGTGCCCTAATTATTTCAGGAAAGTTCGCAGCGTCGAGACGCTGTGGAGAACGAATCATCGCCTCCATCTCGGATCGGAGCTTGGTTCCTTCCTCTCTCAGTAGTGTTGCATGTTGGTCTTACCCGCTGGTGAGGACTTGGAAAATCAATTCGGATGCGGCATGCGATCCTTCCTCTCCGGCGACAGGGCTTGGGATGATTTGCAGAAATTCAGATGGAGATATTATGTTTGCATCCTCGGTTTTCTTCGATTTTCACATGGACGCTCTTTTAGCTGAGCTTCAAGCTATTTGCGAAGGGATCAAAGGGGCAATGTCTTTGGGATGCTCCAAATTAATCGTGGAATCTAACTGCAAGGGATTTAGCGACGAAATCTCAGCGGCGAAACACGAGAAGTCGCTAATCAGCGTCGAAAACAAAAAAAAGTCGCAAACGTGCGACGAAATTCTCGTTTAG 3492 46.16 MDLCRLIATVGLRLPVIADLRRPAATVNLRLPAAVPPTDHHCQPSTTGHRRPPLTTLCRPTAATSAGRPPSTDRPCRPPTIDRRDLYWSSFVDQPPLPSTFDHRALPTGRHRRPSTIDRHRPPPTDRHRQPPLTGCHHQPPPTDCHCRPLTSDRRRPPPTSHHLQPLTIILIVTYITKEVNEQEHSSKAQYKGNKAMGKPTSRRYLSSLLCLWTLIPLFSRQSIAADSIKAGQSINDTQSIVSAAQKFELGFFTEPKPSNFKYLGIWYKGIPDDVVWVANRDNPIVNSSATLTFNGDGNLILLNRTGAAFWLSNSTTSVQDPVAQLLDTGNLVLRDSNSGSENYLWQSFDYPSDTLLPGMKLGWDSKTGLKRKLISRKSPNDPSSGEFSYGVDTDGLPQVVVREGNSTIVRGTPWFGPRFAVGRAKRSDRYIPNFVYNASIEISFSYTDSTNGRSRIVLDSTGLITHFMWSDLAWHKAYTFEGTGCNDYEICGNFGLCSSVVTVSCGCLNGFEQKTAQNVSDGCVRKDPEICRAGEGFKKISDVKWPDSSGQFVKVKMGIQNCEAECLKNCSCSAYGTLQIPEIGFGCVTWFDKLIDVRFVRDAGTGDDLFLRMAASELESNSIANAKSEKKRIVAVVVPTISAVMFLALISWIIIRNVRRSRETEVPVIEIPIKEIELEMPMALIEAATDNFSISNKIGEGGFGPVYKGNLPSGQEIAVKKLAESSHQGQQEFQNEVLLISQLQHRNLVKLLDDARRYLLNWPMRINIIVGIARGLLYLHRDSRLRIVHRDLKAANILLDCEMNPKISDFGIARMFGEDQIETKTNRVVGTYGYMSPEYAIDGYFSFKSDVFSFGVMLLEIVSGKKNKGFSHFEHQLNLLGHFPLDRKLDANLPLFRLASSLVNNSSKISLSFRFVSGKEFEQNLNQQGSDGGDYPSEFSTQLSVDVDVAPTMTLKLQMPSEEKRYCALKSHIFLSQNSSPIQMASQTIYTVHSARQRRDAKDTASRRCRARALIISGKFAASRRCGERIIASISDRSLVPSSLSSVACWSYPLVRTWKINSDAACDPSSPATGLGMICRNSDGDIMFASSVFFDFHMDALLAELQAICEGIKGAMSLGCSKLIVESNCKGFSDEISAAKHEKSLISVENKKKSQTCDEILV 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42411717 42427323 + Maker00036601 Lcy5g1956 633771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1956 1163 CDD RNase_H_like 1061 1132 IPR044730 -
Lcy5g1956 1163 Gene3D - 221 349 IPR036426 -
Lcy5g1956 1163 MobiDBLite consensus disorder prediction 98 163 - -
Lcy5g1956 1163 ProSiteProfiles Protein kinase domain profile. 693 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1956 1163 SMART serkin_6 693 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1956 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1956 1163 SUPERFAMILY Protein kinase-like (PK-like) 683 881 IPR011009 -
Lcy5g1956 1163 Pfam PAN-like domain 532 598 IPR003609 -
Lcy5g1956 1163 SMART blect_4 232 352 IPR001480 -
Lcy5g1956 1163 Pfam Protein tyrosine and serine/threonine kinase 695 753 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1956 1163 CDD PAN_AP_plant 533 615 - -
Lcy5g1956 1163 Gene3D Transferase(Phosphotransferase) domain 1 750 908 - -
Lcy5g1956 1163 MobiDBLite consensus disorder prediction 105 133 - -
Lcy5g1956 1163 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 222 349 - -
Lcy5g1956 1163 Pfam Protein kinase domain 768 867 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1956 1163 ProSiteProfiles PAN/Apple domain profile. 532 615 IPR003609 -
Lcy5g1956 1163 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 216 883 - -
Lcy5g1956 1163 SUPERFAMILY alpha-D-mannose-specific plant lectins 275 383 IPR036426 -
Lcy5g1956 1163 SUPERFAMILY Ribonuclease H-like 1057 1135 IPR012337 -
Lcy5g1956 1163 CDD B_lectin 233 352 IPR001480 -
Lcy5g1956 1163 FunFam Os07g0541700 protein 744 832 - -
Lcy5g1956 1163 Gene3D Phosphorylase Kinase; domain 1 652 749 - -
Lcy5g1956 1163 Pfam S-locus glycoprotein domain 411 515 IPR000858 GO:0048544(InterPro)
Lcy5g1956 1163 MobiDBLite consensus disorder prediction 37 80 - -
Lcy5g1956 1163 Pfam D-mannose binding lectin 275 378 IPR001480 -
Lcy5g1956 1163 Pfam Reverse transcriptase-like 1062 1142 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy5g1956 1163 MobiDBLite consensus disorder prediction 40 68 - -
Lcy5g1956 1163 ProSiteProfiles Bulb-type lectin domain profile. 226 347 IPR001480 -
Lcy5g1956 1163 Gene3D - 1057 1162 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1956 Lcy-Chr5:42411717 Lcy5g1958 Lcy-Chr5:42435742 3.42E-264 dispersed
Lcy8g1644 Lcy-Chr8:43050320 Lcy5g1956 Lcy-Chr5:42411717 8.49E-37 dispersed
Lcy9g0073 Lcy-Chr9:1453949 Lcy5g1956 Lcy-Chr5:42411717 5.21E-34 dispersed
Lcy5g1955 Lcy-Chr5:42395034 Lcy5g1956 Lcy-Chr5:42411717 1.11E-132 tandem
Lcy5g1956 Lcy-Chr5:42411717 Lcy5g1957 Lcy-Chr5:42434157 3.02E-15 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65957 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1956 - - - 0.0