Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1958 ATGAGAGAACTGATTTGGAGGTGCAAACTTTCGGCTTTTCTCTTTCTCTGGACAACCATAGCTCTGTTTCCAAGAAAATCATTAGCTATCGATAGCATAAAAGCAGGGGAAACCATTAATGTCAGTACCCAGATATTAGTTTCAGCTAAACAGAAGTTTGTGTTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTATTTGGGAATATGGTACAGAAACATCCCGCAGACTGTCGTGTGGGTCGCAAACAGAGACAACCCACTTGTAAATTCCTTCGGCAGGTTAACAGTCAATGAAGAAGGAATCATTATTCTTCTCAATGAAACAGGTGGGGTTTTATGGTCTTCCACTTCGCCAGGATCAGTGAAACAACCAGTGACTCAGCTGCTGGATACAGGTAATTTAGTTTTAAAAGAATCAGGGTCTGAAAATTATGCGTGGCAGAGTTTTGATTACCCCTCTCATACTCTGTTACCTGGGATGAAACTTGGTTGGGACTCGAAAACCGGTCTGAACCGAAAGTTAACGTCTTGGAAAAGCTCGAACGATCCGTCGTCTGGGGATTACACTTACAGTGTTGAAATGGATGGGCTTCCCCAGTTTCTAGTTCGCAAAGGACCCATCACAACTTTTCGGGGCGGCCCATGGTATGGTAATAGGTTTAGTGGTTCGGGTCCACTCAGAGAAACCGCAATTTATACTCCAAAGTTCGATTACAATGCTAGCGAAGCATTATTTTCGTATGATGCTGTGAACAATCTCTCGGTAAGAGAGGTACTGAACTCGGGTGGCTTATTTCAACAGTTCTATTGGGTCGATGATGGAAAATATTGGTACCCTGTGTATACATTGCCTGGAGATGGCTGCGATGTCTATGGACTCTGTGGGGATTTTGGTTTTTGTACGTTTTCCGTCACGGCGGGTTGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCAGATGATTGGGAAAAGTTCAGGTGGGCTGATGGTTGCGTTAGAAAGGACAATCGAACCTGTGGAAATGGAGAGGGATTCAAAAAAATCAGCAGTGTGAAATTGCCAGATTCTTCTGGGTATTTGGTGAATGTTAATACGAACATTCGAGACTGTGAGGCGGCGTGTTTGAACAATTGCTCTTGTTTGGCCTATGGAATGATGGAACTTCCCACAGGTGGCTATGGCTGCGTCACCTGGTTTCATAAACTGATGGATGTTAAATTTGTTCTTCAAAATGGACAGGATCTCTATGTTAGAGTGGCAGCTTCAGAATTAGGTAATGCGATCACTCCTGAGATCCCTGCAGGTGAGATTCAATCTCAAGAAAACGAAGTTGAGATGCCAATCTATGATTTTACCACAATCGAAACTGCCACGAATTATTTCTCTTTTTCAAATAAGATTGGTGAAGGCGGTTTTGGTCCTGTATACAAGGGAAAACTTTCATGTGGACAAGAAATTGCTGTAAAGAGGCTGGCAGAGGGCTCTGGCCAAGGGCAAAGCGAGTTCAAAAACGAGGTTTTGTTGATCTCGCAACTTCAACATCGAAATCTTGTTAAGCTTCTTGGGTTCTGCATTCACAAGGAAGAAACATTGCTGGTCTATGAATATATGCCAAACAAAAGTTTAGACCACTTCCTCTTCGATAACGAGAGGAGATACTTACTCAATTGGCAAAAAAGATTGGACATCATAATTGGAACAGCTCGAGGACTTCTTTATCTTCATAGAGATTCGAGGCTAAGAATAATACATAGGGATCTCAAAGTAAGTAATATATTGCTAGACAATGAAATGAATCCGAAAATTTCAGACTTTGGCATGGCACGCATGTTTGGCGAAGATCAAACCATGACAAAAACCAAAAGAGTTGTTGGGACCTATGGCTATATGTCTCCAGAATATGCACTCGATGGGTGTTTTTCATTGAAATCTGATATCTTTAGTTTCGGGGTCATTCTTTTGGAAATAGTTAGCGGTAAGAAGAATAGAGGCTTCTTCCATACCGAACATCAACTGAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCTTTGGAGTTAATGGATGCAGCATTGGATGATCAATTCCAACCTTCTGAAGCACTGCGATGCATTCAAGTAGGTCTTTTGTGTGTTCAACAGAATCCAGATGAAAGGCCAACTATGTGGTCAGTACTTTCGATGTTGGAGAATGAAAACATGTTGTTATCTCATCCTAAACAACCTGGATTTTACACAGAAAGAATGTTTTCTAAGAAGGATAAACTGTCGGCTGAAACCTCCTCTTCCAATGAAGTGACAGTCACATTGCTACATGGTCGTTAG 2340 41.97 MRELIWRCKLSAFLFLWTTIALFPRKSLAIDSIKAGETINVSTQILVSAKQKFVLGIFNPQGSKFQYLGIWYRNIPQTVVWVANRDNPLVNSFGRLTVNEEGIIILLNETGGVLWSSTSPGSVKQPVTQLLDTGNLVLKESGSENYAWQSFDYPSHTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGDYTYSVEMDGLPQFLVRKGPITTFRGGPWYGNRFSGSGPLRETAIYTPKFDYNASEALFSYDAVNNLSVREVLNSGGLFQQFYWVDDGKYWYPVYTLPGDGCDVYGLCGDFGFCTFSVTAGCDCMAGFEPKSPDDWEKFRWADGCVRKDNRTCGNGEGFKKISSVKLPDSSGYLVNVNTNIRDCEAACLNNCSCLAYGMMELPTGGYGCVTWFHKLMDVKFVLQNGQDLYVRVAASELGNAITPEIPAGEIQSQENEVEMPIYDFTTIETATNYFSFSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLVYEYMPNKSLDHFLFDNERRYLLNWQKRLDIIIGTARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFGEDQTMTKTKRVVGTYGYMSPEYALDGCFSLKSDIFSFGVILLEIVSGKKNRGFFHTEHQLNLLGHAWKLWDEENALELMDAALDDQFQPSEALRCIQVGLLCVQQNPDERPTMWSVLSMLENENMLLSHPKQPGFYTERMFSKKDKLSAETSSSNEVTVTLLHGR 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42435742 42439230 + Maker00036389 Lcy5g1958 633773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1958 779 Pfam Domain of unknown function (DUF3403) 736 779 IPR021820 GO:0004674(InterPro)
Lcy5g1958 779 SMART serkin_6 463 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1958 779 PIRSF SRK 429 779 IPR024171 GO:0004674(InterPro)
Lcy5g1958 779 PIRSF SRK 2 444 IPR024171 GO:0004674(InterPro)
Lcy5g1958 779 CDD B_lectin 44 154 IPR001480 -
Lcy5g1958 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1958 779 SUPERFAMILY Protein kinase-like (PK-like) 446 752 IPR011009 -
Lcy5g1958 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 185 IPR036426 -
Lcy5g1958 779 CDD STKc_IRAK 469 736 - -
Lcy5g1958 779 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544(InterPro)
Lcy5g1958 779 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 749 - -
Lcy5g1958 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 539 742 - -
Lcy5g1958 779 Pfam Protein tyrosine and serine/threonine kinase 464 733 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1958 779 Pfam D-mannose binding lectin 78 180 IPR001480 -
Lcy5g1958 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 431 538 - -
Lcy5g1958 779 ProSiteProfiles Protein kinase domain profile. 463 741 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1958 779 Gene3D Phosphorylase Kinase; domain 1 433 538 - -
Lcy5g1958 779 SMART ntp_6 342 421 IPR003609 -
Lcy5g1958 779 Gene3D Transferase(Phosphotransferase) domain 1 539 746 - -
Lcy5g1958 779 SMART blect_4 37 154 IPR001480 -
Lcy5g1958 779 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Lcy5g1958 779 Gene3D - 27 151 IPR036426 -
Lcy5g1958 779 CDD PAN_AP_plant 338 422 - -
Lcy5g1958 779 Pfam PAN-like domain 341 407 IPR003609 -
Lcy5g1958 779 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0596 Lcy-Chr4:7167896 Lcy5g1958 Lcy-Chr5:42435742 2.33E-135 dispersed
Lcy5g1955 Lcy-Chr5:42395034 Lcy5g1958 Lcy-Chr5:42435742 5.11E-195 dispersed
Lcy5g1956 Lcy-Chr5:42411717 Lcy5g1958 Lcy-Chr5:42435742 3.42E-264 dispersed
Lcy5g1958 Lcy-Chr5:42435742 Lcy6g1267 Lcy-Chr6:15708705 4.02E-250 dispersed
Lcy9g1839 Lcy-Chr9:43471196 Lcy5g1958 Lcy-Chr5:42435742 6.65E-74 dispersed
Lcy5g1957 Lcy-Chr5:42434157 Lcy5g1958 Lcy-Chr5:42435742 9.66E-17 tandem
Lcy3g2066 Lcy-Chr3:47600755 Lcy5g1958 Lcy-Chr5:42435742 4.51E-147 transposed
Lcy4g2052 Lcy-Chr4:47092872 Lcy5g1958 Lcy-Chr5:42435742 1.20E-106 transposed
Lcy5g1958 Lcy-Chr5:42435742 Lcy9g1374 Lcy-Chr9:38589392 5.58E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65958 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1958 - - - 0.0