Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1960 ATGAATCCTCCTAAACGACCCATCTTCAAAATACTGTTGATTTTGGTCATTTCTGTTCGCAGCCACCAAAGCCTCGCCGTTGAGAATTCTGCCGTCGATATCATCAAAGATGGAGATCGACTGACTTCCACCAACAAGAACTTCGCTCTTGGATTCTTCAGTTTCAACAATTCCACCACTCACCGGTATGTCGGAATTTGGTACAATAAAATTCCTGAATTAACCGTCGTTTGGGTTGCCAACAGAAACCAACCCCTCAACGACACCTCAGGAACTCTGGCCCTCGACCGTCATGGAAACGTCGTCGTTTTCAGCGCCACACAGACCATATCCCTTTGGGCCACCAACAATTCCATCCAATCGCCAAACGACGTGTCGGTTCAGCTTCAGGATACGGGAAATCTCGCCGTGCTTCAACGACAAAGCCGAAGGGTTATTTGGCAAAGCTTCGATTATCCATCTCATGTCTTCCTTCCCTACATGAAATTGGGGGTCAACCGGCGGACCGGGTTCAGATGGTTCCTCACTTCATGGAAGGCGAACGACGATCCGGGAACCGGGAATTTCACCTGCCGGATTAACTCGACCGGGTATCCACAGATGATTTTGTACGAGGGGGATGTTCCGTCGTGGCGGGGCGGGTCGTGGACGGGCCAGAGATGGACCGGAGTACCCGAAATGACGAGGTCGTTTATAATCAGCGCATCGTATGTCGACAATACCGAAGAGGTTTCCATATCAGACGGCGTAACGATGGATTCGGCTTTAATGAGGATGACTTTAGACGAATCCGGTTCGTTACATCGGTCCAGATGGAACGAACAGGACGGAAGGTGGCACGAGTTTTGGTCCGCTCCAACCGAGTCGTGCGACTACTACAACCGGTGCGGTCGGAACAGTAACTGCGACCCGTACAACGCGGAACAGTTCCAATGCAAGTGCCTGCCCGGGTTCGAGCCGCGGTCGGACCGGGATTGGTTCTTGAGAGATCCGACGGGTGGGTGCGTGAGGAAGAGGCCGAACGCGACGTGTCGGAGTGGAGAGGGTTTTGTGAAGGTGGCACGCGTGAAGGTGCCGGACACGTCGACGGCACGTGCGGATAAGAACATTAGCTTAGAAGCGTGCGAACAAGCGTGTCTGAAGGATTGTAACTGCACGGCTTACACGAGCGCAAATGAGACGACGGGGACCGGCTGCGTGACGTGGTATGGAGATTTGATAGACACGCGGACCTATGCCAACGTGGGTCAAGACCTGTATGTAAGAGTTGATGCCGTTGAATTAGGAAAGGAGAGATCTACGAGTTTATCTTATGACTTTGGGGACTCTCCAAATTCAAAGGAATTTGATAAAAGTAGAAGCTCAGATTTGCCTGTTTTTGACTTGCATACCATAGCAAAGGCAACAGACAGTTTTTCTTTTAATAACAGGCTTGGTGAAGGTGGTTTTGGGGCAGTTTATAAGGGGAAGCTTACAAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGCCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACATAGAAACCTTGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATATTTGCCAAACAAAAGCTTGGACACTTTCATCTTTGATGAAAGCAAGAAGGCTTTGCTCGATTGGAGAAAACGTTTTGAAATCATTTGTGGAGTTGCCCGAGGGATTTTATATCTTCATCAAGATTCAAGATTGAAAATCATCCACCGAGACTTGAAAGCGAGCAATATACTACTAGATGTTGATTTGAACCCCAAAATTTCAGATTTTGGTATGGCAAGAATATTTGGTCAAGATCAAATTCAAGCAAACACAAATCGTATCGTGGGAACATACGGTTATATGTCACCAGAGTATGCAATGGAAGGTCTATTCTCGATGAAATCCGATGTATATAGCTTCGGAGTTTTAGTGCTAGAGATGATCACAGGCAAAAAGAACACCAACTATGATTCGTCCTACTTAAACTTGGTCGGACATGTTTGGGAGCTTTGGAAATTGGACAATGCAATGGAATTAGTTGACTCAAGTTTGGAAGGATCAAGTTGTGGACATGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGACTGTCGTCTTCATGTTGGGGAATGAAGTGGGTCTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGAAAATACAACAGTGGTGATCCATCCACCAGTCCTGAAGGAGCCAACTCTGTAAATGATCTAACGATTTCCATAATCCATGCTCGTTAA 2364 46.74 MNPPKRPIFKILLILVISVRSHQSLAVENSAVDIIKDGDRLTSTNKNFALGFFSFNNSTTHRYVGIWYNKIPELTVVWVANRNQPLNDTSGTLALDRHGNVVVFSATQTISLWATNNSIQSPNDVSVQLQDTGNLAVLQRQSRRVIWQSFDYPSHVFLPYMKLGVNRRTGFRWFLTSWKANDDPGTGNFTCRINSTGYPQMILYEGDVPSWRGGSWTGQRWTGVPEMTRSFIISASYVDNTEEVSISDGVTMDSALMRMTLDESGSLHRSRWNEQDGRWHEFWSAPTESCDYYNRCGRNSNCDPYNAEQFQCKCLPGFEPRSDRDWFLRDPTGGCVRKRPNATCRSGEGFVKVARVKVPDTSTARADKNISLEACEQACLKDCNCTAYTSANETTGTGCVTWYGDLIDTRTYANVGQDLYVRVDAVELGKERSTSLSYDFGDSPNSKEFDKSRSSDLPVFDLHTIAKATDSFSFNNRLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDTFIFDESKKALLDWRKRFEIICGVARGILYLHQDSRLKIIHRDLKASNILLDVDLNPKISDFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSMKSDVYSFGVLVLEMITGKKNTNYDSSYLNLVGHVWELWKLDNAMELVDSSLEGSSCGHEIMRCLQIGLLCVQEDPTDRPTMSTVVFMLGNEVGLPSPKKPAFILKRKYNSGDPSTSPEGANSVNDLTISIIHAR 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42450104 42454780 + Maker00036414 Lcy5g1960 633775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1960 787 ProSiteProfiles Protein kinase domain profile. 472 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1960 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Lcy5g1960 787 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 754 - -
Lcy5g1960 787 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Lcy5g1960 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 548 748 - -
Lcy5g1960 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1960 787 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
Lcy5g1960 787 Gene3D Transferase(Phosphotransferase) domain 1 548 746 - -
Lcy5g1960 787 CDD B_lectin 34 153 IPR001480 -
Lcy5g1960 787 SMART blect_4 32 153 IPR001480 -
Lcy5g1960 787 Pfam D-mannose binding lectin 75 179 IPR001480 -
Lcy5g1960 787 SMART ntp_6 345 423 IPR003609 -
Lcy5g1960 787 CDD PAN_AP_plant 343 423 - -
Lcy5g1960 787 Pfam PAN-like domain 344 409 IPR003609 -
Lcy5g1960 787 SUPERFAMILY Protein kinase-like (PK-like) 449 741 IPR011009 -
Lcy5g1960 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 439 547 - -
Lcy5g1960 787 Gene3D - 29 150 IPR036426 -
Lcy5g1960 787 Pfam Domain of unknown function (DUF3403) 744 787 IPR021820 GO:0004674(InterPro)
Lcy5g1960 787 ProSitePatterns Protein kinases ATP-binding region signature. 478 500 IPR017441 GO:0005524(InterPro)
Lcy5g1960 787 CDD STKc_IRAK 478 741 - -
Lcy5g1960 787 SMART serkin_6 472 740 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1960 787 Pfam Protein tyrosine and serine/threonine kinase 473 738 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1960 787 Gene3D Phosphorylase Kinase; domain 1 446 547 - -
Lcy5g1960 787 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544(InterPro)
Lcy5g1960 787 PIRSF SRK 4 448 IPR024171 GO:0004674(InterPro)
Lcy5g1960 787 PIRSF SRK 429 787 IPR024171 GO:0004674(InterPro)
Lcy5g1960 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 184 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2052 Lcy-Chr4:47092872 Lcy5g1960 Lcy-Chr5:42450104 2.11E-105 dispersed
Lcy5g1960 Lcy-Chr5:42450104 Lcy6g1267 Lcy-Chr6:15708705 1.07E-222 dispersed
Lcy5g1960 Lcy-Chr5:42450104 Lcy5g1961 Lcy-Chr5:42467663 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65959 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1960 - - - 0.0