Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1982 ATGACTCATTCAACATTAAGTCGTTCCCTTGGTCTCAGCTTCTTCTTCTTCACACTGGCATTTGCTCAGCCAAGATTCTTAGCCCATATCTGCGTCGACAACAACAACCACACAACCGACGCCGCCGCCTACCGAGCAAATCTCGACCACCTCCTCTCCACCCTCACCACCGACCACCAAGTCGACTTCGGCTTCTACAACTTCTCTTACGGCCACCAAAACAGAGCACACCTAATCGCCCTCTGCAGAGCAGACATTCCGCCGGAGGCTTGCCGGAGATGCCTCAACGACTCCAGAGACCTCCTCCCCATGCGCTGTCCGACCCAGAAGGAAGCCATTGGATGGTACGACAGCTGTATGCTCCGATACTCCGACCGCCCCTTTTTGGGCGCGATGGAAATTTCACCGGTCAAGTATCTGTGGAACGTGAATGATGCATCGGGTCGGTTCACTCAGGCGGCGAGGGATTTGGTTGTGGATCTGATTGGCGAGGCCGTTTTGGGGGATTCTCGTGTGAAGTTCGCAAGCGGGAACTCGACTGTTCCGAGTTTGCCCACGATTTATGGTCTGGCACAGTGCACGCCGGATTTGTCTCGCCGGCAATGTAACGAGTGCTTGGTTGGGGCTCTGCCTCTGATTCGAAAGTGCTGCGATGGAAAGCGCGGGGGTAGGGTTCTTAGACCCAGTTGTCATTTTCGATTTGAGAGTTTCCCTCTCCTTCAATCGCCAACGCCGCTGCCGTCGCCGTCGCCATCTCCGTCGCCACCTCCACCTGTACTTAACAGAACTACAGATGGAAATAGAAGTAACAAATCTGCAACTTTGGTGGGCGTGGTCGGGTCAATTGTTCTTGTTGTGATGTTGATGATCAGCATCTGCATCTTTCTGAGAAACAGAAGGCCAGAACACGATGGAGTAAATGGTCAACCCGATGAAGAAATCACAATAGTGGGGTTTTTGCAGTTCGATTTGGACACCATTAGAATCGCAACCGATGAATTTTCAGATGCAAATAAACTTGGAGAAGGTGGGTTCGGAGCTGTTTACAAGGGGAAGCTTCCGAATGGACGAATCGTAGCAGTGAAACGGCTGTCGAAGATTTCAAGGCAAGGAGATGTTGAGTTTAAGAACGAAGTCGTTTTGGTGGCTAAGCTTCACCATCGGAATTTAGTTAAGCTTTTGGGTTTCTGCTGCAAAGAAAATGAAAAGCTTCTCGTTTATGAGTTTTTGCAGAATGGAAGTCTTGAAAAACTCATATTCGATCCTGTCGAGCGTCAAAGTTTGAATTGGGCAAAACGCTACAAAATTATAGAAGGGATTACTCGAGGACTTATTTACCTTCACGAAGATTCTCGAATCAAAATCATTCATAGAGATCTAAAAGCTAGTAACATTTTATTAGATGAAGATTTGAATGCTAAAATTTCAGATTTTGGCACCGCAAGATTATTCGAATCTGAACAAACACAAGGAGATACAAGTTCAATAATCGGTACCTTTGGATATATGGCTCCAGAATACGTAAAGCATGGTCATCTCTCAGCCAAATCAGATGTCTTTAGCTTTGGTGTTTTAGTTTTAGAGATTGTAACTGGACAGAAAACTAGCCGCATAATAGATAGCAGCACAGACAAGATGGAAGATAATCTTATAAGCTATGCATGGAGAAATTGGAGGGAGGGAACAACATTGAACATTGTAGATCCTTCTATTCGAATTCGAAGTGCAATTGAAAATGAAGTGGCAAAATGCATCCATATTGGATTACTTTGCATTCAAGAAAAAGTGGGAGAGAGGCCAACTATGGCTAATTTTCAATTCTTCTCCTTATATAATCCGATCATAATCTTCAGCAATGGCGGCAAGGCAACCATGTTCCACTCGACCCTTCTCTTTATCATCATCTTCATCGTCAGCCCGGCAACTGCTCAGCCCAGCTTCTCTTGTTCAAACGACAATGGCAATTACACGGCCAACAGCACTTACGGACTCAATCTCCGGCGCCTCCTCTCCTCAGTCCCGACCGACAAGCGCCTCGAGAAAGGCTTCCTCAACATTTCCTACGGCGAGAACGCCGACAGAGTCAATGCCATCGCGCTCTGCAGAGGGGACCTTAAGCCAGAGCCGTGCCGGCGTTGCCTCAGCGACTCTGTTTTGGAGCTTCCACAGAAATGTCCGAATCAAATGGAAGCAACGATTTGGTACGAAGATTGCATGTTTCGGTATTCGGATCGACGGATTTATGGGGTTTTGAAAGAAACTCCTGCTTTTTATCTGTACAATCTTGAAGATGCGGCGGATTTGCAGGGGTTCAGCCAGGTGGTGCAGGGGCTGCTGGCTGAGCTTACGGAGGAGGCTGGGTTGGGAGATTCTAAGCTGAAATTTAGTGCTGGGAATGTCAGCTATGAGGATGGGGATTATAAGTACGTTTATGGGATGGTGCAGTGCACGCCGGATATGTCACAGCCGCAGTGCGTGGATTGCTTGCAAGCTGCTGCTGGGGCTGTTCAAACATGGAGTCCAGGGAAGATTGGAGCAAGAATTCTTAGTCCCAATTGTTATATTAGGTATGAGATTTATACGTTCTTTGACCCTACAGCTGTTTCGAAAGTTTCCCGGTCGCCGCCTCCACCGACGCCGCCGTCGTCGCCGCTCTTGCCTCCCCCTCTTTCACCAAATATAACTACAAATGCAGAAGGAAACGAGTCTAAGAGATTAAAGACTGCCATCATCATAGTTCTGCCAATTGTTGTGGTTGTTGTACTTGTGGTATTAATTATCAGCATCTTCATCTTTTTAAGAGCAAGAAAACAAAGGATCTATGGAGTTGCAAGTTTAGAAGTGGATGACACTGCTGATCTGGAAACTTTGGTATTTGGTATCAGTACTATAAGAACTGCAACAGATAACTTCTCAGATGCAAATAACATTGGACAAGGTGGCTTTGGAGCTGTTTACAAGGGAAAGCTTGTCAATGGACAAGATATAGCAGTGAAAAGGCTGTCTCAGAACTCAATGCAAGGAGAAAGTGAGTTCAAGAATGAAGTACTGTTGGTGGCTAGACTTCAACACCGGAATTTAGTTCGGTTTCTTGGTTTCTGTCTCCATGAAGACGAAAGGCTTTTGGTGTATGAGTTTGTGCACAACTCGAGTCTTGATAAGTTCATATTTGATCCATTAAAACGTCAAGATTTGGACTGGGAAACGCGCTACAAAATCATTGGAGGCATTGCTCGGGGCCTTGTTTATCTTCATGAAGATTCTCAAATTAAAGTCATTCATCGAGATCTCAAAGCTGCTAATGTTTTATTAGATGCAGAAATGAATCCAAAAATTTCGGATTTTGGCATGGCAAAGTTGTTTCAGCAAGATCAAACACAAGGAGCTACAAGTAGAATTGTTGGCACTCAAGGATACATGGCTCCGGAATATGCAATGCATGGAAAGTTCTCAGGCAAATCAGATGTGTTTAGTTTTGGTGTCTTGGTCTTGGAGATCGTAACCGGCCAGAAAAACAACTCTTTCCAAAACGAGGATAACATAGACGATCTTATAAGCTATGTATGGAGAAACTGGAGGGCAGGAACAGCACTAAATGTTGTGGATCCCAATTTGAGAGGTGGCTCAAGTTGTGAAATGAAGAAATGCATCAACATTGGTTTGCTTTGTGCTCAAGAAAATTCAGCTGACAGACCAACTATGAACACAGTACTTCTCATGCTTAGTAGTGACTCAGTCACTCTCCCAATACTTTCTCCACCAGCTGACTTCATCAACAGGAGCCCCAAATTAGACATGTCTGCTTCACAAGGGAGGTCTAGTTCCCATGTGATAGAGATGGAATGA 3846 45.5 MTHSTLSRSLGLSFFFFTLAFAQPRFLAHICVDNNNHTTDAAAYRANLDHLLSTLTTDHQVDFGFYNFSYGHQNRAHLIALCRADIPPEACRRCLNDSRDLLPMRCPTQKEAIGWYDSCMLRYSDRPFLGAMEISPVKYLWNVNDASGRFTQAARDLVVDLIGEAVLGDSRVKFASGNSTVPSLPTIYGLAQCTPDLSRRQCNECLVGALPLIRKCCDGKRGGRVLRPSCHFRFESFPLLQSPTPLPSPSPSPSPPPPVLNRTTDGNRSNKSATLVGVVGSIVLVVMLMISICIFLRNRRPEHDGVNGQPDEEITIVGFLQFDLDTIRIATDEFSDANKLGEGGFGAVYKGKLPNGRIVAVKRLSKISRQGDVEFKNEVVLVAKLHHRNLVKLLGFCCKENEKLLVYEFLQNGSLEKLIFDPVERQSLNWAKRYKIIEGITRGLIYLHEDSRIKIIHRDLKASNILLDEDLNAKISDFGTARLFESEQTQGDTSSIIGTFGYMAPEYVKHGHLSAKSDVFSFGVLVLEIVTGQKTSRIIDSSTDKMEDNLISYAWRNWREGTTLNIVDPSIRIRSAIENEVAKCIHIGLLCIQEKVGERPTMANFQFFSLYNPIIIFSNGGKATMFHSTLLFIIIFIVSPATAQPSFSCSNDNGNYTANSTYGLNLRRLLSSVPTDKRLEKGFLNISYGENADRVNAIALCRGDLKPEPCRRCLSDSVLELPQKCPNQMEATIWYEDCMFRYSDRRIYGVLKETPAFYLYNLEDAADLQGFSQVVQGLLAELTEEAGLGDSKLKFSAGNVSYEDGDYKYVYGMVQCTPDMSQPQCVDCLQAAAGAVQTWSPGKIGARILSPNCYIRYEIYTFFDPTAVSKVSRSPPPPTPPSSPLLPPPLSPNITTNAEGNESKRLKTAIIIVLPIVVVVVLVVLIISIFIFLRARKQRIYGVASLEVDDTADLETLVFGISTIRTATDNFSDANNIGQGGFGAVYKGKLVNGQDIAVKRLSQNSMQGESEFKNEVLLVARLQHRNLVRFLGFCLHEDERLLVYEFVHNSSLDKFIFDPLKRQDLDWETRYKIIGGIARGLVYLHEDSQIKVIHRDLKAANVLLDAEMNPKISDFGMAKLFQQDQTQGATSRIVGTQGYMAPEYAMHGKFSGKSDVFSFGVLVLEIVTGQKNNSFQNEDNIDDLISYVWRNWRAGTALNVVDPNLRGGSSCEMKKCINIGLLCAQENSADRPTMNTVLLMLSSDSVTLPILSPPADFINRSPKLDMSASQGRSSSHVIEME 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42755047 42763022 - Maker00036150 Lcy5g1982 633797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1982 1281 Gene3D Transferase(Phosphotransferase) domain 1 1047 1247 - -
Lcy5g1982 1281 Gene3D Transferase(Phosphotransferase) domain 1 410 608 - -
Lcy5g1982 1281 SUPERFAMILY Protein kinase-like (PK-like) 312 604 IPR011009 -
Lcy5g1982 1281 FunFam Cysteine-rich receptor-like protein kinase 10 297 409 - -
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 871 898 - -
Lcy5g1982 1281 FunFam Cysteine-rich receptor-like protein kinase 28 1047 1249 - -
Lcy5g1982 1281 FunFam cysteine-rich receptor-like protein kinase 10 410 612 - -
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 242 260 - -
Lcy5g1982 1281 Gene3D - 755 862 IPR038408 -
Lcy5g1982 1281 Gene3D - 24 128 IPR038408 -
Lcy5g1982 1281 Gene3D - 644 746 IPR038408 -
Lcy5g1982 1281 Gene3D - 140 238 IPR038408 -
Lcy5g1982 1281 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 643 747 - -
Lcy5g1982 1281 ProSiteProfiles Protein kinase domain profile. 334 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 ProSiteProfiles Gnk2-homologous domain profile. 753 862 IPR002902 -
Lcy5g1982 1281 CDD STKc_IRAK 977 1241 - -
Lcy5g1982 1281 FunFam Cysteine-rich receptor-like protein kinase 10 137 239 - -
Lcy5g1982 1281 ProSiteProfiles Protein kinase domain profile. 971 1251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 ProSitePatterns Protein kinases ATP-binding region signature. 977 999 IPR017441 GO:0005524(InterPro)
Lcy5g1982 1281 ProSiteProfiles Gnk2-homologous domain profile. 26 128 IPR002902 -
Lcy5g1982 1281 Pfam Protein kinase domain 336 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 SMART serkin_6 334 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 SMART serkin_6 971 1241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 CDD STKc_IRAK 340 602 - -
Lcy5g1982 1281 SUPERFAMILY Protein kinase-like (PK-like) 955 1241 IPR011009 -
Lcy5g1982 1281 FunFam Cysteine-rich receptor-like protein kinase 10 755 862 - -
Lcy5g1982 1281 ProSiteProfiles Gnk2-homologous domain profile. 131 239 IPR002902 -
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 1262 1281 - -
Lcy5g1982 1281 Pfam Protein tyrosine and serine/threonine kinase 975 1237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 1263 1281 - -
Lcy5g1982 1281 FunFam Cysteine-rich receptor-like protein kinase 10 934 1046 - -
Lcy5g1982 1281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 241 268 - -
Lcy5g1982 1281 Gene3D Phosphorylase Kinase; domain 1 936 1046 - -
Lcy5g1982 1281 Gene3D Phosphorylase Kinase; domain 1 306 409 - -
Lcy5g1982 1281 Pfam Salt stress response/antifungal 649 744 IPR002902 -
Lcy5g1982 1281 Pfam Salt stress response/antifungal 31 125 IPR002902 -
Lcy5g1982 1281 Pfam Salt stress response/antifungal 146 235 IPR002902 -
Lcy5g1982 1281 Pfam Salt stress response/antifungal 769 859 IPR002902 -
Lcy5g1982 1281 ProSiteProfiles Gnk2-homologous domain profile. 644 747 IPR002902 -
Lcy5g1982 1281 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524(InterPro)
Lcy5g1982 1281 MobiDBLite consensus disorder prediction 871 891 - -
Lcy5g1982 1281 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 804 1255 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy5g1982 1281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1270 Lcy-Chr13:29861599 Lcy5g1982 Lcy-Chr5:42755047 1.30E-122 dispersed
Lcy1g0410 Lcy-Chr1:3640087 Lcy5g1982 Lcy-Chr5:42755047 0 dispersed
Lcy5g1982 Lcy-Chr5:42755047 Lcy5g1985 Lcy-Chr5:42793925 3.12E-209 dispersed
Lcy5g1982 Lcy-Chr5:42755047 Lcy5g1983 Lcy-Chr5:42779607 2.88E-225 tandem
Lcy13g0747 Lcy-Chr13:11403367 Lcy5g1982 Lcy-Chr5:42755047 8.48E-69 transposed
Lcy13g0748 Lcy-Chr13:11404050 Lcy5g1982 Lcy-Chr5:42755047 4.30E-59 transposed
Lcy1g0409 Lcy-Chr1:3638761 Lcy5g1982 Lcy-Chr5:42755047 1.08E-48 wgd
Lcy5g1982 Lcy-Chr5:42755047 Lcy9g1381 Lcy-Chr9:38736514 8.32E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65961 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1982 - - - 0.0