Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1990 ATGCTCAATTTTCTAACTTTCCTCTTCCTCCTCAGTGTCCTTATCCATGGAAACGCACAGAGCCCAGTTGAATACCCATATCGCGGGTGCTTTTCCGGCAATTTCACCCAGAACAGCACCTACCAGTCCAACCTCAATCTTCTCTTTTCAAATCTCACCGCCAACGGCCCCCAAACAAATCGATTCTTCAACACTTCCGTCGGCCGCACACCAAACGACACCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCAACGCCATCTGCCGAACTTGCTTGGCCACCGCTACCAGAGACACAGCTCGGCTGTACTGTCCCCTTAGAAAAGGCGCTGTGGTTTGGTACGACGAATGCATATTTCGCTATTCCGACCAATCTTTCTTTTCCACCGTCTCCACAGAGCCAAGTTTGCAATTACTGAATACGGGCGATATAGACGTCGATAAGGCTCGATTCAACCAACTGGTCATGTCCACGTTGAGGAACACCGCGACTCGGGCGGCCAACGCCTCTTCGGTGGGCGAATTGTTTGCAACCCAGCAGGCTAATTTCACATCAGATCTCACGCTTTACACATTAGCACAGTGCACCGGCGATTTGTCCAGTACGGATTGCGAAGAATGCTTACGACAAGCTACCAATGATATTCCGAGTTGTTGCAGTAATAAACGAGGTGGGAGAGTTTTGTTGCCCAGCTGTTACGTTCGTTACGAAGTTTACATGTTTTACGAACTCACGCCAACGAATTCGGCACCGCCTCCGGCAACTCCCACTCCCAATTCGACAACTCCAACACCACCTCGTCTTCCTTCTTCTCCTCCGCCAGAGGACGGCAGATCCTCAACTATGTTAATTGTGGCCATTGCGACTCCAATTGCCATCTCCATACTGCTATTTGTTCTGGGATGGTGTTTCCTGCGCCGAAGAGCCAAGAAGAGATACTCTGCTGCAAAGGAAGATAGTGTTGTTAATGAGATGACCACTGTGGAATCTCTGCAATTTGATTTCAAAACAATCGACGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGCGGGTTTGGTGCAGTCTTTAAGGGTCGACTTGATAATGGACAAGAGATAGCGGTGAAAAGACTATCAAGAGGATCTCTGCAAGGTTCCGAAGAGTTTAAGAATGAGGTGATGTTAGTTGCTAAGCTTCAACATAGAAATCTAGTGAGGCTATTGGGATTCTGCTTGGAGGGTGAAGAAAAGATTCTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCTTATTTGATCCAGATAGACAAAGAGAGTTGGATTGGTTGAAACGATATAAGATCATCAATGGAATTGCTCGAGGAATACTATATCTGCATGAAGATTCTCGTCTTCGAATTATTCATCGTGATCTTAAAGCGAGTAACATCTTGTTAGATGGAGATATGAATGCAAAAATTTCAGATTTTGGCATGGCAAGAATTATTCAAGTGGATCAAACTCAAGGAAATACAAGTAGGATTGTTGGTACCTACGGTTACATGTCTCCTGAATATGCAATGCATGGAAACTTCTCTATGAAATCAGATGTGTATAGCTTTGGAGTTTTAGTCTTGGAGATTTTAAGTGGCAAGAAAAACAACACCTTTTACTTGTCAGATCTTGCTGAAGACATTTTGACCTATGCTTGGAAACTGTGGAAGGATGGAATACCATTAGAATTATTGGACCCAAGTTTGAGAGATAGTTACTCAAGAAATGAGGTGCTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAGTAGTAGACCTTCCATGGCATCCATTGTTCTCATGCTTAATAGTTATTCGGTTACTTTGCCATTGCCCGAAGAGCCAGCATTCTTCATGCGCAGTAAAGACAATGGCATTATAACAGACAGTGATCAATCTACAAACAGGTCTCTCCAGTGGTCTGTCAATGAAACATCTATATCTGAATTGCATCCACGATGA 2010 44.23 MLNFLTFLFLLSVLIHGNAQSPVEYPYRGCFSGNFTQNSTYQSNLNLLFSNLTANGPQTNRFFNTSVGRTPNDTVYGLFQCRGDVTNAICRTCLATATRDTARLYCPLRKGAVVWYDECIFRYSDQSFFSTVSTEPSLQLLNTGDIDVDKARFNQLVMSTLRNTATRAANASSVGELFATQQANFTSDLTLYTLAQCTGDLSSTDCEECLRQATNDIPSCCSNKRGGRVLLPSCYVRYEVYMFYELTPTNSAPPPATPTPNSTTPTPPRLPSSPPPEDGRSSTMLIVAIATPIAISILLFVLGWCFLRRRAKKRYSAAKEDSVVNEMTTVESLQFDFKTIDAATNKFSEENRLGEGGFGAVFKGRLDNGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDFFLFDPDRQRELDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNAKISDFGMARIIQVDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLSDLAEDILTYAWKLWKDGIPLELLDPSLRDSYSRNEVLRCIHIALLCVQEDPSSRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDNGIITDSDQSTNRSLQWSVNETSISELHPR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42848416 42851118 - Maker00036928 Lcy5g1990 633805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1990 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1990 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 634 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Lcy5g1990 669 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Lcy5g1990 669 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 128 - -
Lcy5g1990 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
Lcy5g1990 669 MobiDBLite consensus disorder prediction 251 275 - -
Lcy5g1990 669 CDD STKc_IRAK 353 619 - -
Lcy5g1990 669 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Lcy5g1990 669 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1990 669 Gene3D - 136 243 IPR038408 -
Lcy5g1990 669 Gene3D - 23 128 IPR038408 -
Lcy5g1990 669 MobiDBLite consensus disorder prediction 249 280 - -
Lcy5g1990 669 FunFam Cysteine-rich receptor-like protein kinase 25 136 243 - -
Lcy5g1990 669 Pfam Salt stress response/antifungal 30 126 IPR002902 -
Lcy5g1990 669 Pfam Salt stress response/antifungal 151 240 IPR002902 -
Lcy5g1990 669 ProSiteProfiles Protein kinase domain profile. 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1990 669 FunFam cysteine-rich receptor-like protein kinase 10 423 625 - -
Lcy5g1990 669 ProSiteProfiles Gnk2-homologous domain profile. 134 243 IPR002902 -
Lcy5g1990 669 SUPERFAMILY Protein kinase-like (PK-like) 332 651 IPR011009 -
Lcy5g1990 669 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Lcy5g1990 669 FunFam Cysteine-rich receptor-like protein kinase 10 309 422 - -
Lcy5g1990 669 SMART serkin_6 347 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0417 Lcy-Chr1:3688729 Lcy5g1990 Lcy-Chr5:42848416 4.12E-158 dispersed
Lcy4g0581 Lcy-Chr4:7047579 Lcy5g1990 Lcy-Chr5:42848416 1.15E-38 dispersed
Lcy5g1983 Lcy-Chr5:42779607 Lcy5g1990 Lcy-Chr5:42848416 5.96E-169 dispersed
Lcy5g1985 Lcy-Chr5:42793925 Lcy5g1990 Lcy-Chr5:42848416 4.53E-170 dispersed
Lcy5g1990 Lcy-Chr5:42848416 Lcy5g1997 Lcy-Chr5:42978128 8.61e-315 dispersed
Lcy5g1995 Lcy-Chr5:42956522 Lcy5g1990 Lcy-Chr5:42848416 3.47E-35 dispersed
Lcy7g1158 Lcy-Chr7:13282688 Lcy5g1990 Lcy-Chr5:42848416 6.32E-16 dispersed
Lcy5g1981 Lcy-Chr5:42753431 Lcy5g1990 Lcy-Chr5:42848416 5.93E-20 proximal
Lcy5g1990 Lcy-Chr5:42848416 Lcy5g1991 Lcy-Chr5:42865674 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65964 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1990 - - - 0.0