Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g1992 | CCAGAGAGACAAAGAGAGTTGGATTGGTTGAAACGATACAAGATTATCAATGGAATTGCTCGAGGAATCTTATATTTGCACGAAGATTCTCGTCTTCGAATTATTCATCGTGATCTTAAAACCAGTAACATCTTGTTAGATGGGGATATGAATCCAAAAATTTCAGATTTTGGTATGGCAAGAATTATCCAAATGGATCAAACTCACGGAAATACAAGTCGGATTGTGGGCACTTACGGTTACATGTCTCCCGAATATGCAATGCACGGAAACTTCTCTTTAAAATCTGATGTATATAGCTTTGGAGTCTTAGTTTTTGAAATTTTAAGTGGCAAGAAAAACAACACCTTCTACTTGTCAGATCTTGCTGAAGATATGTTGACCTATGCTTGGAAACTATGGAAGGATGGAACATCATTAGCATTATTGGACCCGAGCATGAGAGATAGTTACTCAAAAAATCAGGTGCTTAGATGCATTCATGTTGCTTTACTATGTGTTCAGGAGGATCCTAATCGTAGACCTTCTATGGCATCCATTGTTCTTATGCTTAATAGTCATTCTATTACTTTGCCATTGCCTAGAGAGCCATCATTCTTTATGCACAGTAAAGAGGGTGGTATTCTAATAGACAATAATCAATCTACGAGTAGATCTGTCCAATGGCCTGTTAATGAAACATCTATATCTGAGTTATACCCACGATAA | 708 | 37.15 | PERQRELDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKTSNILLDGDMNPKISDFGMARIIQMDQTHGNTSRIVGTYGYMSPEYAMHGNFSLKSDVYSFGVLVFEILSGKKNNTFYLSDLAEDMLTYAWKLWKDGTSLALLDPSMRDSYSKNQVLRCIHVALLCVQEDPNRRPSMASIVLMLNSHSITLPLPREPSFFMHSKEGGILIDNNQSTSRSVQWPVNETSISELYPR | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 42891927 | 42892902 | - | Maker00036440 | Lcy5g1992 | 633807 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g1992 | 235 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 34 | 46 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy5g1992 | 235 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 3 | 200 | - | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER) | |
| Lcy5g1992 | 235 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 205 | IPR011009 | - | |
| Lcy5g1992 | 235 | FunFam | cysteine-rich receptor-like protein kinase 10 | 1 | 191 | - | - | |
| Lcy5g1992 | 235 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 191 | - | - | |
| Lcy5g1992 | 235 | SMART | serkin_6 | 3 | 190 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g1992 | 235 | ProSiteProfiles | Protein kinase domain profile. | 1 | 190 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g1992 | 235 | Pfam | Protein tyrosine and serine/threonine kinase | 4 | 182 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g1992 | Lcy-Chr5:42891927 | Lcy5g1997 | Lcy-Chr5:42978128 | 1.36E-120 | dispersed | |
| Lcy5g1991 | Lcy-Chr5:42865674 | Lcy5g1992 | Lcy-Chr5:42891927 | 4.22E-104 | tandem | |
| Lcy5g1992 | Lcy-Chr5:42891927 | Lcy5g1993 | Lcy-Chr5:42908979 | 4.61E-118 | tandem | |
| Lcy5g1992 | Lcy-Chr5:42891927 | Lcy9g1387 | Lcy-Chr9:38822568 | 4.06E-51 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65966 | None | None | None | None | Lcy | PK |
Pathway information