Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1993 GAAAGCAGAGCCTCGACGGTGATAATTGTGGCCATTGTGGTTTCAATTACTGTTTCCATTCTGCTTTTCGCGGGCTACTGTTTCTTGCGCCGAAGAACAGACACGATGAATTACATAGCTGTGATTGAAGATAGTGATTTTGATGAGTTGACCACTGTGGAATCTCTACAATTTGATTTGGATACAATTGATGCTGCTACTAACAAATTCTCAGCGGAAAACAAATTGGGTGAAGGTGGATTTGGGGCAGTCTACAAGGGTACACTTGAGAATGGACAAGAGATAGCAGTGAAGAGATTATCAAGTAGATCTTCGCAAGGTTCTAAAGAGTTCGAGAATGAGGTTTTGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTGAGGCTATTGGGATTTTGCTTGGAGGATGGAGAAAAGATACTTGTCTATGAGTACATTTCCAACAAAAGCCTCGACTATTTCTTATTTGGTTTGGTCCCAAAATCTTTGTACCTATATAATTTGTTCACTTATGCTCTAGCTTGTTTGATTCTCTTCCTCTTTATTGAATTTGATTATCTAAATTATGCAGATTCTATAAGACAGAGAGAGCTGGATTGGTCAACGCGATATAACATCATCAACGGAATTGCTCGAGGAATGTTATATCTACATGAAGATTCACAACTTCGAATTATTCATCGTGATCTTAAAGCGAGTAACATTTTGTTAGATGGAGATATGAATCCAAAAATTTCGGACTTTGGTATGGCAAGGATTATCCAATTAGATCAAACTCAAGAAAATACTAGAAGAATTGTTGGTACCTATGGTTACATGTCTCCTGAATATGCAATGCACGGAAATTTTTCTATAAAATCTGATGTATATAGCTTTGGAGTCTTAATCTTGGAGATTATAAGCGGCAAGAAAAACAACACGTTTTACTCGTCAGATCTTGCTGAAAACATGTTAACCTATGCTTGGAAACTCTGGAAGGACCAAACACCATTGGAGTTATTGGATATGAGTTTGAGAGACAATTATTCAAGAAATGAGGTGTTGAGATGCATCTATATTGCTTTGTTATGTGTTCAACAGGATTCTAGGAGAAGACCTTCCATGTCATCCATTATTCTAATGCTTAACAGCTATTCAATTACTTTGTCGTCATTGCCGATAGAGTCAACATCCTTCATGAGCAGTAACTACGATGACAATAATGTTGTAGATAGTGATCAGTACACGAGCAAGTCTATCAAGTGGTCTCTAATGAAGCATCCATATATCTGA 1272 37.19 ESRASTVIIVAIVVSITVSILLFAGYCFLRRRTDTMNYIAVIEDSDFDELTTVESLQFDLDTIDAATNKFSAENKLGEGGFGAVYKGTLENGQEIAVKRLSSRSSQGSKEFENEVLLVAKLQHRNLVRLLGFCLEDGEKILVYEYISNKSLDYFLFGLVPKSLYLYNLFTYALACLILFLFIEFDYLNYADSIRQRELDWSTRYNIINGIARGMLYLHEDSQLRIIHRDLKASNILLDGDMNPKISDFGMARIIQLDQTQENTRRIVGTYGYMSPEYAMHGNFSIKSDVYSFGVLILEIISGKKNNTFYSSDLAENMLTYAWKLWKDQTPLELLDMSLRDNYSRNEVLRCIYIALLCVQQDSRRRPSMSSIILMLNSYSITLSSLPIESTSFMSSNYDDNNVVDSDQYTSKSIKWSLMKHPYI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42908979 42911058 - Maker00036280 Lcy5g1993 633808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1993 423 SMART serkin_6 70 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1993 423 SUPERFAMILY Protein kinase-like (PK-like) 56 404 IPR011009 -
Lcy5g1993 423 Gene3D Phosphorylase Kinase; domain 1 35 145 - -
Lcy5g1993 423 Pfam Protein tyrosine and serine/threonine kinase 72 372 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1993 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1993 423 CDD STKc_IRAK 76 376 - -
Lcy5g1993 423 Gene3D Transferase(Phosphotransferase) domain 1 184 388 - -
Lcy5g1993 423 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 381 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Lcy5g1993 423 FunFam Cysteine-rich receptor-like protein kinase 10 31 145 - -
Lcy5g1993 423 FunFam cysteine-rich receptor-like protein kinase 10 178 382 - -
Lcy5g1993 423 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524(InterPro)
Lcy5g1993 423 ProSiteProfiles Protein kinase domain profile. 70 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1993 Lcy-Chr5:42908979 Lcy5g1997 Lcy-Chr5:42978128 7.04E-172 dispersed
Lcy5g1992 Lcy-Chr5:42891927 Lcy5g1993 Lcy-Chr5:42908979 4.61E-118 tandem
Lcy5g1993 Lcy-Chr5:42908979 Lcy5g1994 Lcy-Chr5:42924968 1.24E-158 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65967 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1993 - - - 0.0