Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1997 TTCATTATCCATGGACATGCTCAGTCTCTTTACCGGTGTGGACCCACCAATTTCACCTCCAATAGCAGCTATGAATCGAGCGTTAATCTTCTCCTTTCGAATCTCTCCACCAACGCCCCCGGAATTAATGGATTCTTCAATACCTCCGTCGGCCATACACGGCCAGACGACACCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGCCACCAACGGCTCCTGCCGAAATTGCTTAAAGGAAGCTACCACAAACGTAGCCCGTCAGTTCTGTCCCTTGAGCAAAGGCGCTGTGGTTTGGTATGACGACTGCTTGTTGCGTTATTCTGACCAAAACTTTTTTTCCATGGTGTCCACTGAGCCAAGTTTCAGCTTAGATAACGTCGATAGTATAGGCGTGGACACGCCTCGCTTCAACCAATTAGTGATGTCCACATTGATGGCCACGGCGGCTAACGCCTCTTTGGCGGTGGGCCAAATGTTTGCAACGGGAGAGGCAATTTTCACATCAAATACAACACTTTACGCATTAGTACAGTGCAGCGGCGATTTGTCAAATTCGAATTGCCAAGATTGCTTAGCACGAGTTATCAGGAGTATTCCGGGTTGCTGCAATAATAAAAAAGGTGGGAGAATTTTGTTTCCGAGCTGTTACGCTCGTTACGAACTTTACCCGTTTTACCAACTCACCAGGACCAATTCGGTAACGCCTCCTGCGCCAGCAACTCGCCCGCCCACTTCAGCAACTCCACCACCACCACCTCCTTCCTTAGCAAGGGAAAACATATCCTCGGCGGTGATAATTGTAGCCATCGTGGTTCCAGTTACTGCCTCCATTCTGCTTTTGGTTCTGGGCTGGAGTTTCCTGCTCCGAAGAGTAAAGAAGAAATACTCTGCTGTTAAGGAAGATAGTGTTATCAATGAAATCACCTCTGTGGAATCTCTGCAATTTGATTTCAATACAATTGAAGCTGCTACTAACAAATTCTCAGTGGAGAACAAGTTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGTACACTTGATAATGGGCAAGAGATAGCAGTGAAAAGATTATCAAGTAGATCTTTGCAAGGTTCTGAAGAGTTCAAAAATGAGGTTGTGTTGGTTGCTAAACTTCAACATAGAAATCTTGTAAGGCTATTGGGATTCTGCTTGGAGGGTGGAGAAAAGATACTTATCTATGAATACATTCCCAACAAAAGCCTTGACTATTTCCTATTTGATATCGAGGGACAGAACGTGTTAGATTGGTTGAGTCGACATAAGATCATAAATGGGATTGCTCGGGGAATGTTATATTTACATGAAGATTCACGACTTCGAATTATTCATCGTGATCTTAAAGCAAGCAATGTCTTGTTAGATGAGAAAATGAATCCAAAGATTTCAGACTTTGGTATGGCAAGAATTGTTCAAATTGATGAAACTCAAAGAAATACATGTCGAATTGTTGGTACCTATGGTTACATGGCTCTGGAATATGCAATGCACGGAAACTTCTCCATGAAATCTGACGTATATAGCTTTGGAGTTCTAGTATTGGAGATTATAAGTGGAAAGAAAAACAACACCTTTTATATGTCAGGTCTTGCTGAAGACATCTTGACCTATGCTTGGAAATTATGGAAGGATGGAACACCATTAGAACTACTGGACTCGGGTTTGAGAGATAGTCACTCAAGAAATGAAGTGCTTAGATGCATCCATATTGCTTTACTTTGTGTTCAGGAGGATCCCGGCTGTAGACCCTCCATGGCATCCGTTGTTCTTATGTTGAATAGTTATTCAGTTACTTTGCTTGAGCCTAAAGAACCAACATTCTTCATGCGCAGTAGAGATAATGATACTGCAGTAGATGGTGATCCATCTTCGAATAGGTCTCAATACTCTGCCAATAAAGTATCTATAACTGAATTGTACCCACGATGA 1950 43.18 FIIHGHAQSLYRCGPTNFTSNSSYESSVNLLLSNLSTNAPGINGFFNTSVGHTRPDDTVYGLFQCRGDATNGSCRNCLKEATTNVARQFCPLSKGAVVWYDDCLLRYSDQNFFSMVSTEPSFSLDNVDSIGVDTPRFNQLVMSTLMATAANASLAVGQMFATGEAIFTSNTTLYALVQCSGDLSNSNCQDCLARVIRSIPGCCNNKKGGRILFPSCYARYELYPFYQLTRTNSVTPPAPATRPPTSATPPPPPPSLARENISSAVIIVAIVVPVTASILLLVLGWSFLLRRVKKKYSAVKEDSVINEITSVESLQFDFNTIEAATNKFSVENKLGEGGFGAVYKGTLDNGQEIAVKRLSSRSLQGSEEFKNEVVLVAKLQHRNLVRLLGFCLEGGEKILIYEYIPNKSLDYFLFDIEGQNVLDWLSRHKIINGIARGMLYLHEDSRLRIIHRDLKASNVLLDEKMNPKISDFGMARIVQIDETQRNTCRIVGTYGYMALEYAMHGNFSMKSDVYSFGVLVLEIISGKKNNTFYMSGLAEDILTYAWKLWKDGTPLELLDSGLRDSHSRNEVLRCIHIALLCVQEDPGCRPSMASVVLMLNSYSVTLLEPKEPTFFMRSRDNDTAVDGDPSSNRSQYSANKVSITELYPR 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42978128 42981926 - Maker00036458 Lcy5g1997 633812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1997 649 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 55 615 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Lcy5g1997 649 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Lcy5g1997 649 Gene3D - 7 112 IPR038408 -
Lcy5g1997 649 Gene3D - 126 225 IPR038408 -
Lcy5g1997 649 ProSiteProfiles Protein kinase domain profile. 328 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1997 649 CDD STKc_IRAK 334 600 - -
Lcy5g1997 649 MobiDBLite consensus disorder prediction 237 255 - -
Lcy5g1997 649 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Lcy5g1997 649 MobiDBLite consensus disorder prediction 618 649 - -
Lcy5g1997 649 ProSiteProfiles Gnk2-homologous domain profile. 118 225 IPR002902 -
Lcy5g1997 649 MobiDBLite consensus disorder prediction 234 255 - -
Lcy5g1997 649 FunFam Cysteine-rich receptor-like protein kinase 10 290 403 - -
Lcy5g1997 649 SUPERFAMILY Protein kinase-like (PK-like) 313 630 IPR011009 -
Lcy5g1997 649 Pfam Salt stress response/antifungal 141 222 IPR002902 -
Lcy5g1997 649 Pfam Salt stress response/antifungal 13 110 IPR002902 -
Lcy5g1997 649 SMART serkin_6 328 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1997 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1997 649 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1997 649 MobiDBLite consensus disorder prediction 627 642 - -
Lcy5g1997 649 FunFam cysteine-rich receptor-like protein kinase 10 404 606 - -
Lcy5g1997 649 FunFam Cysteine-rich receptor-like protein kinase 10 122 225 - -
Lcy5g1997 649 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524(InterPro)
Lcy5g1997 649 ProSiteProfiles Gnk2-homologous domain profile. 6 112 IPR002902 -
Lcy5g1997 649 FunFam Cysteine-rich receptor-like protein kinase 28 9 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1990 Lcy-Chr5:42848416 Lcy5g1997 Lcy-Chr5:42978128 8.61e-315 dispersed
Lcy5g1991 Lcy-Chr5:42865674 Lcy5g1997 Lcy-Chr5:42978128 4.03E-263 dispersed
Lcy5g1992 Lcy-Chr5:42891927 Lcy5g1997 Lcy-Chr5:42978128 1.36E-120 dispersed
Lcy5g1993 Lcy-Chr5:42908979 Lcy5g1997 Lcy-Chr5:42978128 7.04E-172 dispersed
Lcy5g1994 Lcy-Chr5:42924968 Lcy5g1997 Lcy-Chr5:42978128 1.82E-259 dispersed
Lcy5g1997 Lcy-Chr5:42978128 Lcy6g1267 Lcy-Chr6:15708705 1.08E-127 dispersed
Lcy7g0161 Lcy-Chr7:1450383 Lcy5g1997 Lcy-Chr5:42978128 1.06E-40 dispersed
Lcy5g1996 Lcy-Chr5:42963896 Lcy5g1997 Lcy-Chr5:42978128 4.65E-202 tandem
Lcy12g1159 Lcy-Chr12:22407315 Lcy5g1997 Lcy-Chr5:42978128 5.70E-07 transposed
Lcy4g0579 Lcy-Chr4:7034584 Lcy5g1997 Lcy-Chr5:42978128 6.99E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65970 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1997 - - - 0.0