Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2008 ATGAGGTATAAGGAAGCTCTAAGCAATACCAGTTGCCCTAATTGTGGAGGTCCAGCCGCTCTTGGTGAGATGTCCTTTGATGGCCAACATTTGAGAATTGACAATGCACATTTAAGAGAAGAGATCGAGAGATTAAACACAGTTGCTACCAAATATGGTGGCAAGCCATGGGCTTCCCATTCCCATATTCCATCTCATCATGTTCCTTCTAGAGCCCTTGATTTGGGCGTTGGGAGATTGAAGTCCCAACCAGATTTCTTGGGGGAAATGTATGGAGTTGGAGACATGTTGAAGTCTGTGACCACTGAAATTGACAAGCCAGTAATCGTTGAGCTTGCAGTTTCAGCCATGGAAGAAGTGTACAGAATGGCTCAAGCAGGAGAGCCCTTGTGGGTTCCTGGTGAAAACTCCATGGAAATGCTGAACGAAGATGAATACTTGAGGACTTACTCTAGAGGAATTGGCCCTAGAGTTTTGGGGCTAAGCTTTGAAGCTTCAAGGGAATCCTCCATTGTTGCTTTCAATCATCTAAAACTTGTCGACATTCTCATGGACGTGAATCAGTGGTCGACCATATTTTGCGGCATAGTTTCAAGAGCATTGACCCTGGAAGTCTTATCAAGTGGAGTTGCTGGCAACTACAATGGAGCTATACAAGTCATGACAGCGGAGTTCCAGGTTCCTTCTCCTCTGGTTCCGACTCGCCAAAATTACTTCGTGAGATACTGCAAGCAGCAGCAGGCCGAGGGGACATGGGCTGTGGTGGATGTTTCTCTCGACTATTTACGCCCCACTCCAATTTCAAGGACTCGAAGAAGACCGTCCGGTTGCTTGATCCAAGAACTACCAAATGGTTACTCAAAGGTTACTTGGGTGGAACATGTGGAAGTGGATGACCGAGCAGTGCACAATTTGTACAAACGACTGGTGACTTGTGGGCTTGCGTTCGGCGCAAAACGGTGGGTGGCTACTTTGGGCCGACAGTGCGAGCGCCTCACCAACTCCTTGGCCGCCAATATTCCTGCAGTAGACATATGCGTGGTGACAGGGCAGGAGGGGAGGAAGAGCGTGATGAAGCTAGCAGAGAGGATGGTGACGAGCTTCTGCAGTGGCGTTGGGGCTTCTTCGGCTCACAATTGGACCACATTATCCGCCATTGGTTCGGACGACGTTCGAGTCATGGCTCGAAAGAGCCTCGACGACCCGGGCAGGCCTCCTGGCATTGTTCTTAATGCAGCCACTTCATTCTGGATTCCAATTCCTCCTAACAGAGTCTTCGATTTCCTCCGAGATCAAAACAGGCGCAGCCAGTGGGATATACTTTCAAATGGTGGCTTGGTCCAAGAAATGGCTCGCATTGGCAACGATCGCAACCCAGGAAACTCCGTCTCGTTGCTTCGTGTCAACAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTACAAGAAAGCTGCAGCGACGTGACGGGCTGCTACATAATTTACGCACCAGTCGACACCATCGCCATGAACATGGTGTTAAGCGGCGGCGACCCTGATTATGTTGCTCTCTTGCCATCCGGATTCGCCATACTGCCCGATGGGGCTATTGGGCCGGATGGGCCTGGCCCCAATGGACCTCCAGGAATTCTCGAGTTCGGGTCCGGTGGTTCGTTGCTCACAGTTGCATTTCAGATATTGGTGGATTCAATTCCAACCGCCAAACTGTCTATGGGATCGGTGGCGACGGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAGAGCTGCAGTCATGTGTGAGCAGCCGTTGAATTGA 1800 50.11 MRYKEALSNTSCPNCGGPAALGEMSFDGQHLRIDNAHLREEIERLNTVATKYGGKPWASHSHIPSHHVPSRALDLGVGRLKSQPDFLGEMYGVGDMLKSVTTEIDKPVIVELAVSAMEEVYRMAQAGEPLWVPGENSMEMLNEDEYLRTYSRGIGPRVLGLSFEASRESSIVAFNHLKLVDILMDVNQWSTIFCGIVSRALTLEVLSSGVAGNYNGAIQVMTAEFQVPSPLVPTRQNYFVRYCKQQQAEGTWAVVDVSLDYLRPTPISRTRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHNLYKRLVTCGLAFGAKRWVATLGRQCERLTNSLAANIPAVDICVVTGQEGRKSVMKLAERMVTSFCSGVGASSAHNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFDFLRDQNRRSQWDILSNGGLVQEMARIGNDRNPGNSVSLLRVNSANSSQSNMLILQESCSDVTGCYIIYAPVDTIAMNMVLSGGDPDYVALLPSGFAILPDGAIGPDGPGPNGPPGILEFGSGGSLLTVAFQILVDSIPTAKLSMGSVATVNSLIKCTVERIRAAVMCEQPLN 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43070878 43075483 + Maker00036523 Lcy5g2008 633823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2008 599 CDD START_ArGLABRA2_like 106 330 - -
Lcy5g2008 599 Pfam START domain 112 331 IPR002913 GO:0008289(InterPro)
Lcy5g2008 599 SMART START_1 111 331 IPR002913 GO:0008289(InterPro)
Lcy5g2008 599 SUPERFAMILY Bet v1-like 102 332 - -
Lcy5g2008 599 Gene3D - 145 322 IPR023393 -
Lcy5g2008 599 FunFam Homeobox-leucine zipper protein GLABRA 2 111 330 - -
Lcy5g2008 599 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 594 IPR042160 -
Lcy5g2008 599 SUPERFAMILY Bet v1-like 352 589 - -
Lcy5g2008 599 ProSiteProfiles START domain profile. 102 334 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0431 Lcy-Chr1:3811227 Lcy5g2008 Lcy-Chr5:43070878 1.21E-290 dispersed
Lcy5g2008 Lcy-Chr5:43070878 Lcy8g1446 Lcy-Chr8:41124241 6.61E-306 dispersed
Lcy4g0564 Lcy-Chr4:6910018 Lcy5g2008 Lcy-Chr5:43070878 5.99E-299 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2008 K09338 - csv:101212604 964.14