Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2010 ATGAGCCCTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAACTGCAGCATATTCATCCGACCGCCCACTCCCCACCACCAGCGGCAGGGCTATGCCCAATGAGTTGCCGCAGAAGCCTCCCCCTTCAATTGCTCACCGGTTTAGAGCTCTGCTAAAGCAGCGGGATGACGAATTCAGGGTTTCTGGCCATGATGTTGTGCCCCCTCCTTCCACTGAGGATATCGTGCAGTTCTACGAGCTCATGTTGTCGGAGCTCACCTTTAATTCCAAGCCCATCATTACGGATCTCACTGTTCTTGCTGACGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGTATTATCGAGGTCCCGGTTGACCAAAAACTTCCTTCATTATATCTATTGGACAGTATCGTTAAGAATGTTGGGCACGAATACATTAGTTATTTCTCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGTCACCTCTTCGGGACATGGTCAACTGTGTTTCCACCATCCATCCTTCGGAAGATTGAAGCTCAACTTTCTCAGATAACAACACAAGAGTCCCCAGGTTTGGCATCCTCAAGGGCTTCTGAGTCTCCTCGGCCAACTCATGGCATTCATGTCAATCCGAAATACTTGCGTCAACTAGAACATTCTGTGGTGGATAAAACAATACTTTTCTTTCAAGCTGGGAGATGGAATTTCTATGAGGTTTTTGGGTGCAACTGTGATGATTACATATTTGGTGATGCTTTTAAAAGGTCGTATGTTTCGGCTAATTCCATAGAGCATATCCAAGATGCAAGAGGGACTTCAGCTCTAAAAGTGCATGATAAAAAACTTGCTCCTGGATATGAAGAGTATGACTATGATCATGCAGATGTTCTCGAACATGGTGGAGCTCAATCATTTAATGCCATGGGAAACATGGGTCATGATTCTTTTTCTCTTGGAACAAATAAAGCAAATCTAAAGATAGCGAAATCATCTTTGTCTTCAAGAATTGGAAACAATAGGCCTCTACAATCAGTTGGTGATGAACTTGAAGCAGTTAGAGCGTCACCATCTCAGAATGTATATGATTATGAAGTTTGTAGAATGATTGATAGAAATGAGGATACAAATAAATGGAGGAGAAAACAATATCCTGACGATAATTTGACTGGACTTGAAAGTACTTCTTCATATAATATTAGAAACGGACACGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGCGATAAAGGAAAAGGTTATTTAAATGACAATCCACCACAGGTTGAACATTTTTCTATTAATGGTATAGACAACAAGGTGACTCCAGTAACTTGGCAAAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGACAGAGGCAGAAGTAGTGATATGTTGAAACCACCGGTCCTGCCTTCAAGATTTAGGACGAACAGATCAAATGCTATGTCTGTAGAGCCTGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCTACTTCTCTTGATTCCTCCATAGTTACTGAAGATGTGGTCCCATCATCATCTGATATTTGGAATATGCACAATCACCTCTCTCATACATCCCAGAACCTCATGAACGCTAAAGGAACAGGAAGGAATTTTCAGATGCCTTTGTTAGGGAGAGGCATAGCTTCATCTGGTAGTGAGAAAATGTCTCCTTTTGTTGATAAACTTCTGACCAATGATGCTCTACATAGGCCCCCTATCGTTGTTTCAAGATTGGGTTCTTCTGGTCTTGACTCTAGCATTGAGCTGCAATCAGTTGTACAATCTATGGGCCCAAGGCATCCTGTGAATGTTCCTAACTCTTGCCCACCCTCTAGGCCTCCAATTTTTCCTGTACCAAGACACAATAAGAGCCAGTTTGAGTCTTTAAATGGTAGCAATTCTTTCATGAATCGTGCAAATAGGTCTTTTTTGCCTGAGCAGCAGATGAATAATTTGAGAAATAAGGAGCCAAGTCTAACAACTAAGTTGCCTCAAGTCGGCAATCAACATACTGGGCGTATTCCTTTGACTCAGGGAAACCAATTGCAGGCTATCCCTTTAAAACCTCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAATGCATCAGCGGTACCTCCTGCATTACCACATTTAATGGCACCATCCTTGAGTCAAGGATACAGTTCACATGGACATCGTCCTGCTATTAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGGCAATGGAGCTTACCAGTTCATAACAGCCCCAGTAACTCTTTGCATTTACAAGGGGGACCTCTGCCACCTCTACCACCTGGGCCTCATCCTACTTCTGTTCCAACGATACCCATCTCTCAAACTGCAGGATCCCTTATTCCTGGTCAGCAACCAGGAACTGCATTTTCTGGCCTTATAAGTTCTCTCATGGCCCAGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTGAAGGTGCGGCATGAATCTGCAATAACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGCCTTAGGTTCAAGTCCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCGAAAAGTAGAAAGCAAAAGCCTTCTCGTAAGTGGTTTGTAAGTACAAGTATGTGGCTTAGCGGTGCAGAGGCTTTGGGAACTGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCATTGTAGAGAAAAAGGATGATGAAGAACTGGCTGTTCCCGCTGATGAGGATCAGAAGACGTGTGCACTATGTGGAGAACCCTTTGATGATTTTTACAGCGATGAAACAGAGGAATGGATGTATAGGGGTGCTGTCTACATGAATGCACCTGATGGACAAACGGCCGGCATGGATAAATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACCGAATCTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAACAAGGGGGAGTTAGTGAAGAGGGTAGTCGAAGAAAACGATTGCGGAGCTAG 3150 43.56 MSPFMESEKLLISRGNPRTAAYSSDRPLPTTSGRAMPNELPQKPPPSIAHRFRALLKQRDDEFRVSGHDVVPPPSTEDIVQFYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIIEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWSTVFPPSILRKIEAQLSQITTQESPGLASSRASESPRPTHGIHVNPKYLRQLEHSVVDKTILFFQAGRWNFYEVFGCNCDDYIFGDAFKRSYVSANSIEHIQDARGTSALKVHDKKLAPGYEEYDYDHADVLEHGGAQSFNAMGNMGHDSFSLGTNKANLKIAKSSLSSRIGNNRPLQSVGDELEAVRASPSQNVYDYEVCRMIDRNEDTNKWRRKQYPDDNLTGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQVEHFSINGIDNKVTPVTWQNTEEEEFDWEDMSPTLADRGRSSDMLKPPVLPSRFRTNRSNAMSVEPGMRSNWSSQVQLPTSLDSSIVTEDVVPSSSDIWNMHNHLSHTSQNLMNAKGTGRNFQMPLLGRGIASSGSEKMSPFVDKLLTNDALHRPPIVVSRLGSSGLDSSIELQSVVQSMGPRHPVNVPNSCPPSRPPIFPVPRHNKSQFESLNGSNSFMNRANRSFLPEQQMNNLRNKEPSLTTKLPQVGNQHTGRIPLTQGNQLQAIPLKPQFLPSQDMQDNFNASAVPPALPHLMAPSLSQGYSSHGHRPAISEGLSSSAPIGQWSLPVHNSPSNSLHLQGGPLPPLPPGPHPTSVPTIPISQTAGSLIPGQQPGTAFSGLISSLMAQGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKSQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPADEDQKTCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGQTAGMDKSQLGPIVHAKCRTESNVVPSESFDQDEQGGVSEEGSRRKRLRS 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43106628 43115364 - Maker00036506 Lcy5g2010 633825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2010 1049 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 55 1040 IPR045154 GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 17 37 - -
Lcy5g2010 1049 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Lcy5g2010 1049 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Lcy5g2010 1049 CDD CID_Pcf11 80 202 IPR047415 -
Lcy5g2010 1049 Pfam CID domain 87 194 IPR006569 -
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 203 223 - -
Lcy5g2010 1049 SMART 558neu5 78 200 IPR006569 -
Lcy5g2010 1049 ProSitePatterns Zinc finger C2H2 type domain signature. 882 902 IPR013087 -
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 1 45 - -
Lcy5g2010 1049 SUPERFAMILY ENTH/VHS domain 74 203 IPR008942 -
Lcy5g2010 1049 Gene3D - 73 202 IPR008942 -
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 1021 1049 - -
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 203 219 - -
Lcy5g2010 1049 MobiDBLite consensus disorder prediction 481 502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0374 Lcy-Chr5:3763270 Lcy5g2010 Lcy-Chr5:43106628 1.17E-64 dispersed
Lcy5g2010 Lcy-Chr5:43106628 Lcy5g0369 Lcy-Chr5:3713110 3.75E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2010 K14400 - csv:101206311 1748.79