Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2010 | ATGAGCCCTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAACTGCAGCATATTCATCCGACCGCCCACTCCCCACCACCAGCGGCAGGGCTATGCCCAATGAGTTGCCGCAGAAGCCTCCCCCTTCAATTGCTCACCGGTTTAGAGCTCTGCTAAAGCAGCGGGATGACGAATTCAGGGTTTCTGGCCATGATGTTGTGCCCCCTCCTTCCACTGAGGATATCGTGCAGTTCTACGAGCTCATGTTGTCGGAGCTCACCTTTAATTCCAAGCCCATCATTACGGATCTCACTGTTCTTGCTGACGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGTATTATCGAGGTCCCGGTTGACCAAAAACTTCCTTCATTATATCTATTGGACAGTATCGTTAAGAATGTTGGGCACGAATACATTAGTTATTTCTCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGTCACCTCTTCGGGACATGGTCAACTGTGTTTCCACCATCCATCCTTCGGAAGATTGAAGCTCAACTTTCTCAGATAACAACACAAGAGTCCCCAGGTTTGGCATCCTCAAGGGCTTCTGAGTCTCCTCGGCCAACTCATGGCATTCATGTCAATCCGAAATACTTGCGTCAACTAGAACATTCTGTGGTGGATAAAACAATACTTTTCTTTCAAGCTGGGAGATGGAATTTCTATGAGGTTTTTGGGTGCAACTGTGATGATTACATATTTGGTGATGCTTTTAAAAGGTCGTATGTTTCGGCTAATTCCATAGAGCATATCCAAGATGCAAGAGGGACTTCAGCTCTAAAAGTGCATGATAAAAAACTTGCTCCTGGATATGAAGAGTATGACTATGATCATGCAGATGTTCTCGAACATGGTGGAGCTCAATCATTTAATGCCATGGGAAACATGGGTCATGATTCTTTTTCTCTTGGAACAAATAAAGCAAATCTAAAGATAGCGAAATCATCTTTGTCTTCAAGAATTGGAAACAATAGGCCTCTACAATCAGTTGGTGATGAACTTGAAGCAGTTAGAGCGTCACCATCTCAGAATGTATATGATTATGAAGTTTGTAGAATGATTGATAGAAATGAGGATACAAATAAATGGAGGAGAAAACAATATCCTGACGATAATTTGACTGGACTTGAAAGTACTTCTTCATATAATATTAGAAACGGACACGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGCGATAAAGGAAAAGGTTATTTAAATGACAATCCACCACAGGTTGAACATTTTTCTATTAATGGTATAGACAACAAGGTGACTCCAGTAACTTGGCAAAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGACAGAGGCAGAAGTAGTGATATGTTGAAACCACCGGTCCTGCCTTCAAGATTTAGGACGAACAGATCAAATGCTATGTCTGTAGAGCCTGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCTACTTCTCTTGATTCCTCCATAGTTACTGAAGATGTGGTCCCATCATCATCTGATATTTGGAATATGCACAATCACCTCTCTCATACATCCCAGAACCTCATGAACGCTAAAGGAACAGGAAGGAATTTTCAGATGCCTTTGTTAGGGAGAGGCATAGCTTCATCTGGTAGTGAGAAAATGTCTCCTTTTGTTGATAAACTTCTGACCAATGATGCTCTACATAGGCCCCCTATCGTTGTTTCAAGATTGGGTTCTTCTGGTCTTGACTCTAGCATTGAGCTGCAATCAGTTGTACAATCTATGGGCCCAAGGCATCCTGTGAATGTTCCTAACTCTTGCCCACCCTCTAGGCCTCCAATTTTTCCTGTACCAAGACACAATAAGAGCCAGTTTGAGTCTTTAAATGGTAGCAATTCTTTCATGAATCGTGCAAATAGGTCTTTTTTGCCTGAGCAGCAGATGAATAATTTGAGAAATAAGGAGCCAAGTCTAACAACTAAGTTGCCTCAAGTCGGCAATCAACATACTGGGCGTATTCCTTTGACTCAGGGAAACCAATTGCAGGCTATCCCTTTAAAACCTCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAATGCATCAGCGGTACCTCCTGCATTACCACATTTAATGGCACCATCCTTGAGTCAAGGATACAGTTCACATGGACATCGTCCTGCTATTAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGGCAATGGAGCTTACCAGTTCATAACAGCCCCAGTAACTCTTTGCATTTACAAGGGGGACCTCTGCCACCTCTACCACCTGGGCCTCATCCTACTTCTGTTCCAACGATACCCATCTCTCAAACTGCAGGATCCCTTATTCCTGGTCAGCAACCAGGAACTGCATTTTCTGGCCTTATAAGTTCTCTCATGGCCCAGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTGAAGGTGCGGCATGAATCTGCAATAACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGCCTTAGGTTCAAGTCCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCGAAAAGTAGAAAGCAAAAGCCTTCTCGTAAGTGGTTTGTAAGTACAAGTATGTGGCTTAGCGGTGCAGAGGCTTTGGGAACTGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCATTGTAGAGAAAAAGGATGATGAAGAACTGGCTGTTCCCGCTGATGAGGATCAGAAGACGTGTGCACTATGTGGAGAACCCTTTGATGATTTTTACAGCGATGAAACAGAGGAATGGATGTATAGGGGTGCTGTCTACATGAATGCACCTGATGGACAAACGGCCGGCATGGATAAATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACCGAATCTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAACAAGGGGGAGTTAGTGAAGAGGGTAGTCGAAGAAAACGATTGCGGAGCTAG | 3150 | 43.56 | MSPFMESEKLLISRGNPRTAAYSSDRPLPTTSGRAMPNELPQKPPPSIAHRFRALLKQRDDEFRVSGHDVVPPPSTEDIVQFYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIIEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWSTVFPPSILRKIEAQLSQITTQESPGLASSRASESPRPTHGIHVNPKYLRQLEHSVVDKTILFFQAGRWNFYEVFGCNCDDYIFGDAFKRSYVSANSIEHIQDARGTSALKVHDKKLAPGYEEYDYDHADVLEHGGAQSFNAMGNMGHDSFSLGTNKANLKIAKSSLSSRIGNNRPLQSVGDELEAVRASPSQNVYDYEVCRMIDRNEDTNKWRRKQYPDDNLTGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQVEHFSINGIDNKVTPVTWQNTEEEEFDWEDMSPTLADRGRSSDMLKPPVLPSRFRTNRSNAMSVEPGMRSNWSSQVQLPTSLDSSIVTEDVVPSSSDIWNMHNHLSHTSQNLMNAKGTGRNFQMPLLGRGIASSGSEKMSPFVDKLLTNDALHRPPIVVSRLGSSGLDSSIELQSVVQSMGPRHPVNVPNSCPPSRPPIFPVPRHNKSQFESLNGSNSFMNRANRSFLPEQQMNNLRNKEPSLTTKLPQVGNQHTGRIPLTQGNQLQAIPLKPQFLPSQDMQDNFNASAVPPALPHLMAPSLSQGYSSHGHRPAISEGLSSSAPIGQWSLPVHNSPSNSLHLQGGPLPPLPPGPHPTSVPTIPISQTAGSLIPGQQPGTAFSGLISSLMAQGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKSQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPADEDQKTCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGQTAGMDKSQLGPIVHAKCRTESNVVPSESFDQDEQGGVSEEGSRRKRLRS | 1049 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43106628 | 43115364 | - | Maker00036506 | Lcy5g2010 | 633825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2010 | 1049 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 55 | 1040 | IPR045154 | GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro) | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 17 | 37 | - | - | |
Lcy5g2010 | 1049 | ProSiteProfiles | CID domain profile. | 75 | 203 | IPR006569 | - | |
Lcy5g2010 | 1049 | FunFam | polyadenylation and cleavage factor homolog 4 | 72 | 200 | - | - | |
Lcy5g2010 | 1049 | CDD | CID_Pcf11 | 80 | 202 | IPR047415 | - | |
Lcy5g2010 | 1049 | Pfam | CID domain | 87 | 194 | IPR006569 | - | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 203 | 223 | - | - | |
Lcy5g2010 | 1049 | SMART | 558neu5 | 78 | 200 | IPR006569 | - | |
Lcy5g2010 | 1049 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 882 | 902 | IPR013087 | - | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Lcy5g2010 | 1049 | SUPERFAMILY | ENTH/VHS domain | 74 | 203 | IPR008942 | - | |
Lcy5g2010 | 1049 | Gene3D | - | 73 | 202 | IPR008942 | - | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 1021 | 1049 | - | - | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 203 | 219 | - | - | |
Lcy5g2010 | 1049 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0374 | Lcy-Chr5:3763270 | Lcy5g2010 | Lcy-Chr5:43106628 | 1.17E-64 | dispersed | |
Lcy5g2010 | Lcy-Chr5:43106628 | Lcy5g0369 | Lcy-Chr5:3713110 | 3.75E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2010 | K14400 | - | csv:101206311 | 1748.79 |