Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2024 ATGGGTTCCAGAACACTGTTTTTCTTCATATTGCTTTCCTTTTTGGCTTCTGCTTCTTTCAGGTCTGCTTCTGCACAGGATGAGGAAGACACTGGTCTTGTTATGAACTTTTACAAGGATACATGTCCCCAAGCTGAAGATATCATCAAAGAACAAGTCAGGCTTCTCTACAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTTCAATCCTGTGATGCATCTCTGCTTCTGGATTCGACAAGAAGGACCCTGTCCGAGAAAGAAACAGACAGGAGCTTTGGACTGAGGAACTTTAGGTATATTGAGACCATAAAAGAGGCAGTGGAGAGGGAGTGCCCTGGAGTTGTGTCCTGTGCGGACATCCTTGTTTTGTCTGCAAGAGATGGCATTGTTTCTCTTGGGGGGCCTTACATCCCACTTAAGACTGGCAGAAGAGATGGAAGGAGAAGCAGAGCTGAAGTGGTGGAAGAGTACCTTCCAGACCACAATGAAAGCATGTCTGTTGTTCTTGAAAGATTTGCAGCCATGGGTATTGACACCCCTGGAGTTGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGTTGGTGCACCGGCTCTACCCAGAGGTAGACCCTGTGCTGAACCCTGGCCATGTAGAGCACATGCTGTACAAGTGTCCTGATGAGATCCCAGATCCCAAGGCTGTACAGTACGTGAGGAATGACCGTGGTACACCCATGATTCTGGACAACAACTACTACAGAAACATACTTGACAACAAGGGGTTGCTGATAGTGGACCATCAACTGGCCACAGACAAGAGAACAAAGCCATACGTGAAGAAAATGGCCAAAAAGCAAGACTATTTCTTCAAGGAATTCTCAAGAGCCATTACCATCCTTTCTGAGAACAACCCTCTCACTGGCACAAAGGGTGAGATCAGGAAGCAGTGCAATGTTGCCAACAAGCTGCACTGA 999 46.85 MGSRTLFFFILLSFLASASFRSASAQDEEDTGLVMNFYKDTCPQAEDIIKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEAVERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRRSRAEVVEEYLPDHNESMSVVLERFAAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPEVDPVLNPGHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCNVANKLH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43257386 43259602 - Maker00036048 Lcy5g2024 633839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2024 332 ProSiteProfiles Plant heme peroxidase family profile. 32 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 SUPERFAMILY Heme-dependent peroxidases 33 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 FunFam Peroxidase 36 177 - -
Lcy5g2024 332 FunFam Peroxidase 169 308 - -
Lcy5g2024 332 Pfam Peroxidase 50 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 Gene3D - 36 329 - -
Lcy5g2024 332 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 Gene3D Peroxidase, domain 2 169 308 - -
Lcy5g2024 332 CDD secretory_peroxidase 32 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy5g2024 332 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2024 332 PANTHER - 16 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1385 Lcy-Chr1:13414689 Lcy5g2024 Lcy-Chr5:43257386 6.66E-103 dispersed
Lcy5g2024 Lcy-Chr5:43257386 Lcy6g0931 Lcy-Chr6:9470773 4.99E-61 dispersed
Lcy5g2024 Lcy-Chr5:43257386 Lcy5g0277 Lcy-Chr5:2596675 8.19E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2024 K00430 - csv:101214168 622.468