Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2026 ATGTCTTGCTCAAATCTGACTATGTGGGTGTCTTCTAAACCCACCGTCTCTGATGCATCCTCCCTTTCTTTCAGCTCGTTTCTCAGCCCTTTTCAGCTCCCTTCCCAGAGCTGCCCTGCTCGATCATTGTCAGTTTCGCCGATTCATTGCGGTCTTCGGGAGCTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCCATGAAGCTTGTTGCTGCTGCAAAAGTCCGCAGGGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCAGAGGCCTTGGTTGAGGTCCTTTACAACATCAATGAGCAGCTTCAAACAGAAGACATTGATGTTCCTCTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTGGTTGTTTGCACTGGTGACCGAGGTCTTTGTGGTGGATTCAACAACACCATCATCAAGAAAGCTGAAGCCAGAATCTCAGAATTGAAGCAACTGGGTCTTGAGTACACTGTCATCAGTGTCGGCAAAAAGGGTAACTCCTATTTCCTTCGCCGGCCTTACATTCCGGTGGATAAGTTCCTCGAAGGTGGCACTCTTCCCACTGCCAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTCAGTGAGGAGGTTGATAAAGTAGAGCTTCTGTACACCAAATTCGTGTCTTTGGTCAAATCTGATCCTGTAATTCACACCCTTCTTCCTCTCTCGCCAAAGGGTGAGATCTGTGATGTGAATGGAATCTGTGTGGATGCTGCAGAAGATGAGTTCTTCAGATTGACAACAAAGGAAGGGAAACTGACGGTGGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCTCCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCACTGCAAGAATCACTGGCCAGTGAGCTCGCAGCTAGAATGAGTGCAATGAGCAATGCGACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCGATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1119 46.47 MSCSNLTMWVSSKPTVSDASSLSFSSFLSPFQLPSQSCPARSLSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDIDVPLTKVRPVKKVALVVCTGDRGLCGGFNNTIIKKAEARISELKQLGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43270257 43271375 + Maker00036637 Lcy5g2026 633841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2026 372 Hamap ATP synthase gamma chain [atpG]. 49 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 PANTHER ATP SYNTHASE GAMMA CHAIN 1 371 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Lcy5g2026 372 NCBIfam ATP synthase F1 subunit gamma 51 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 ProSitePatterns ATP synthase gamma subunit signature. 357 370 IPR023632 -
Lcy5g2026 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 119 - -
Lcy5g2026 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 371 - -
Lcy5g2026 372 Pfam ATP synthase 52 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 FunFam ATP synthase gamma chain, chloroplastic 119 242 - -
Lcy5g2026 372 Gene3D - 120 242 - -
Lcy5g2026 372 FunFam ATP synthase gamma chain, chloroplastic 50 117 - -
Lcy5g2026 372 FunFam ATP synthase gamma chain, chloroplastic 268 371 - -
Lcy5g2026 372 PRINTS ATP synthase gamma subunit signature 123 142 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 PRINTS ATP synthase gamma subunit signature 216 233 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 PRINTS ATP synthase gamma subunit signature 349 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 PRINTS ATP synthase gamma subunit signature 318 337 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 51 371 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy5g2026 372 CDD F1-ATPase_gamma 52 368 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2026 Lcy-Chr5:43270257 Lcy6g1447 Lcy-Chr6:21735803 6.28E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2026 K02115 - csv:101214408 666.381