Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2043 ATGGCTTCCACATCATCCCACCTTCTAACTCTTCTCATCACTCTCTCATTCATCAATCCATCCCTTCAAGATTACTACACTCCAGCCAAGACCAACATGAACGTAATCGACTCATGCTGGCGGACGAGGTCCAATTGGGCCAACAACCGCCGAGCCTTGGCGGACTGCGCGGTGGGCTTCGGCAAGGACGCAATCGGAGGAAAATTTGGTACAATTTACGTCGTCACTGACCCATCCGACAACCCTTCAAACCCCAAATTTGGAACTCTACGTTACGGTGTGATTCAAAACAAGCCACTGTGGATCGTGTTCGCCAAGGACATGGTCATTGTGCTGAAGAATGAGCTAATGGTAAACAGTTTCAAGACCATCGATGGGCGTGGGGCTAAAGTGGAAATCGCTTATGGGCCTTGCATTACGGTGCAGGGAGTGAGCCATGTTATTATTCATGGGATTAGTATTCATGACTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACACTGTCTCGCATGTTGGCCAACGGCATGGCTCTGATGGCGATGCCATTGCTATATTTGCTTCTTCTTATATTTGGGTTGATCATTGCTTTTTAGCTCGATCTACTGATGGTCTTATTGATATCATTCATGCTTCCACTGCTGTTACTATCTCCAATAACTACTTTTCCCAACATGATAAAGTGATGCTGCTTGGACATAATGATGGGTTCACTGATGATAAAATTATGAGGGTTACCATCGTCTTCAATCGCTTCGGTGCTGGCCTCATCGAGAGGATGCCGAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGATGAGTGGCAAATGTATGCCATTGGTGGAAGTGCAAACCCAACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATTCCAATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCGTCGAGAGATGTGTTCATAAATGGTGCTTATTTTGTGCAATCAGGATGGGGAAGTTGCAGCCCAATTTACACGAGGGCTCAGTCTTTTCCAGTGGCTCCAGGCTCCATGGTTCCAGCTTTGACTGCAAATGCTGGCCCCCTTCGTTGTTTTATTGGCAAACCTTGCTGA 1143 46.54 MASTSSHLLTLLITLSFINPSLQDYYTPAKTNMNVIDSCWRTRSNWANNRRALADCAVGFGKDAIGGKFGTIYVVTDPSDNPSNPKFGTLRYGVIQNKPLWIVFAKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVSHVGQRHGSDGDAIAIFASSYIWVDHCFLARSTDGLIDIIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFINGAYFVQSGWGSCSPIYTRAQSFPVAPGSMVPALTANAGPLRCFIGKPC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43440215 43441965 - Maker00036207 Lcy5g2043 633858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2043 380 PANTHER PECTATE LYASE 18-RELATED 29 375 IPR045032 GO:0030570(InterPro)
Lcy5g2043 380 Pfam Pectate lyase 113 298 IPR002022 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Lcy5g2043 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Lcy5g2043 380 Gene3D - 33 373 IPR012334 -
Lcy5g2043 380 SUPERFAMILY Pectin lyase-like 33 371 IPR011050 -
Lcy5g2043 380 SMART amb_all 107 304 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2043 Lcy-Chr5:43440215 Lcy5g2168 Lcy-Chr5:44640219 1.13E-144 dispersed
Lcy1g0461 Lcy-Chr1:4038334 Lcy5g2043 Lcy-Chr5:43440215 1.71E-206 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2043 K01728 - csv:101211379 716.457