Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2043 | ATGGCTTCCACATCATCCCACCTTCTAACTCTTCTCATCACTCTCTCATTCATCAATCCATCCCTTCAAGATTACTACACTCCAGCCAAGACCAACATGAACGTAATCGACTCATGCTGGCGGACGAGGTCCAATTGGGCCAACAACCGCCGAGCCTTGGCGGACTGCGCGGTGGGCTTCGGCAAGGACGCAATCGGAGGAAAATTTGGTACAATTTACGTCGTCACTGACCCATCCGACAACCCTTCAAACCCCAAATTTGGAACTCTACGTTACGGTGTGATTCAAAACAAGCCACTGTGGATCGTGTTCGCCAAGGACATGGTCATTGTGCTGAAGAATGAGCTAATGGTAAACAGTTTCAAGACCATCGATGGGCGTGGGGCTAAAGTGGAAATCGCTTATGGGCCTTGCATTACGGTGCAGGGAGTGAGCCATGTTATTATTCATGGGATTAGTATTCATGACTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACACTGTCTCGCATGTTGGCCAACGGCATGGCTCTGATGGCGATGCCATTGCTATATTTGCTTCTTCTTATATTTGGGTTGATCATTGCTTTTTAGCTCGATCTACTGATGGTCTTATTGATATCATTCATGCTTCCACTGCTGTTACTATCTCCAATAACTACTTTTCCCAACATGATAAAGTGATGCTGCTTGGACATAATGATGGGTTCACTGATGATAAAATTATGAGGGTTACCATCGTCTTCAATCGCTTCGGTGCTGGCCTCATCGAGAGGATGCCGAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGATGAGTGGCAAATGTATGCCATTGGTGGAAGTGCAAACCCAACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATTCCAATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCGTCGAGAGATGTGTTCATAAATGGTGCTTATTTTGTGCAATCAGGATGGGGAAGTTGCAGCCCAATTTACACGAGGGCTCAGTCTTTTCCAGTGGCTCCAGGCTCCATGGTTCCAGCTTTGACTGCAAATGCTGGCCCCCTTCGTTGTTTTATTGGCAAACCTTGCTGA | 1143 | 46.54 | MASTSSHLLTLLITLSFINPSLQDYYTPAKTNMNVIDSCWRTRSNWANNRRALADCAVGFGKDAIGGKFGTIYVVTDPSDNPSNPKFGTLRYGVIQNKPLWIVFAKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVSHVGQRHGSDGDAIAIFASSYIWVDHCFLARSTDGLIDIIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFINGAYFVQSGWGSCSPIYTRAQSFPVAPGSMVPALTANAGPLRCFIGKPC | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43440215 | 43441965 | - | Maker00036207 | Lcy5g2043 | 633858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2043 | 380 | PANTHER | PECTATE LYASE 18-RELATED | 29 | 375 | IPR045032 | GO:0030570(InterPro) | |
Lcy5g2043 | 380 | Pfam | Pectate lyase | 113 | 298 | IPR002022 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 259 | 278 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 115 | 131 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 351 | 374 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 79 | 104 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 179 | 200 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 321 | 345 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 281 | 300 | IPR018082 | - | |
Lcy5g2043 | 380 | PRINTS | Pollen allergen Amb family signature | 56 | 73 | IPR018082 | - | |
Lcy5g2043 | 380 | Gene3D | - | 33 | 373 | IPR012334 | - | |
Lcy5g2043 | 380 | SUPERFAMILY | Pectin lyase-like | 33 | 371 | IPR011050 | - | |
Lcy5g2043 | 380 | SMART | amb_all | 107 | 304 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2043 | Lcy-Chr5:43440215 | Lcy5g2168 | Lcy-Chr5:44640219 | 1.13E-144 | dispersed | |
Lcy1g0461 | Lcy-Chr1:4038334 | Lcy5g2043 | Lcy-Chr5:43440215 | 1.71E-206 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2043 | K01728 | - | csv:101211379 | 716.457 |