Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2076 ATGGTTAGAAGGAAAAGAAAATGGAAGATGGCGGTAAATAAAAAAAGGTTTGAGCTCACAGCTCAGACTGGGCAGACCTCATTAACTTCCAAACAACTACACACTGCTCACTCCAATGCCTTTTGCTTCCAAGTCTCGTTGGTCTCAGCTCAGCTGTTTCTTCATAAATTCTCTTCATTCCTAAGAAATGCTGAAATTAATGGACATGGAATCGACGAGAAAAGCGTTGATCATCCAAGCCTAACCCACTCGCATTTCAAAGACCTCAGAAGTCTACGCCTTGTCGGCTGGGTAATGGCTCCGACAGAGGTGAAACCGCCTTATCTGCAATTTCTTCCGCTTCTGATGTTAATTTCGATGTCCAGAATAGGCGCCTCGGACACTATGTTCAACGAGTCAGTAAGTGGGCATTCGGTTGTTGCAAAAAATGAAAACCCGAAAGCATGCTACATGTCTCGATACTGTCGTTATGCTGTGGTAATAATATGGCATCCTCAAATTGTATTCTTTTCTCTGTGGCTAGGACGGTGCCCCCGCGGTTGGTTTATTAGCCCGAACAAGACCAAGTGCTATGGTTTCATGTCGAGCCCTCAATCATGGAATGAATCAGAGACCAAATGTAATGGTTTTGGTGGAAACTTAGCAGCACTGATAACATTACAAGAGTTTAGCTTTGCACAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGTGTTCAACTCTTCGAATGATTTTGTATGGAAGTGGTCAGATAATGTTTCAAAATGGAATGATTCCATTATTCCCAGCACAGCTCTGCAATCTAATTGCAAAAACGTCTCGTGCCGCATGAATGATGCGGTTGAAACGTGTACTTTGATATTTGGTGGACCAGCCTCACCGTTCCTTAAAGATGAGAAATGCAACAGCTCTCACCCTTTCATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTCATTCTAGCAGTCGTGAGTGGGTTGATATTTTGCACGACGTTAGCTGTGGTGATTTGGCTTCTTGCCTACAAGAGGAGCAGAAAGCGGAAAAGGTCTCGGAAGCCATCCAATCCTGCAGCTTCTGCACTGGTACCCCCTTCATGGAAGGTGTTTACCAAAGAAGAGCTAAGATCGATTACGAAAAACTTCAGTGAGGGGAACCGTCTTCTTGGAGACACAAAAACAGGTGGTACATACAGTGGACTTTTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTAAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTCCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCATCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCACGGTGACCGCTACATTGTTTATGAATTCATCGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTTCCAAGAGGTGGTCGAAGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTTAAGCCACACGTGGTACATCGTGATATCCGTGCCAGTAATGTACTTCTTGATGAAGAATTTGGCGCACATCTGATGGGAGTTGGCCTGTCAAAATTGGTGGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGGGGGACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACAACAAAGAGCGATGTCTATAGTTTCGGGGTCCTGTTGCTTGAAATCGTGACTGGCCGAAGGCCCGCACAGGCAGTTGATTCTGTTGGTTGGCAGAGCATTTTTGAATGGGCAACGCCCCTCGTTCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATGTAACGGCTACTTCTACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAGGTGGTGGACCTTGTGTATGCTTGCACGCAGCATGTCCCATCCATGCGCCCTAGAATGTCGCATGTTGTCCATCAGTTGCAACAATTGGCACCCTCACCCCTCACTATGAAGTAG 2058 45.34 MVRRKRKWKMAVNKKRFELTAQTGQTSLTSKQLHTAHSNAFCFQVSLVSAQLFLHKFSSFLRNAEINGHGIDEKSVDHPSLTHSHFKDLRSLRLVGWVMAPTEVKPPYLQFLPLLMLISMSRIGASDTMFNESVSGHSVVAKNENPKACYMSRYCRYAVVIIWHPQIVFFSLWLGRCPRGWFISPNKTKCYGFMSSPQSWNESETKCNGFGGNLAALITLQEFSFAQNLCNGTLGGCWVGGRVFNSSNDFVWKWSDNVSKWNDSIIPSTALQSNCKNVSCRMNDAVETCTLIFGGPASPFLKDEKCNSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAYKRSRKRKRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHVTATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43878112 43881693 - Maker00036765 Lcy5g2076 633891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2076 685 Gene3D - 173 318 IPR016186 -
Lcy5g2076 685 Pfam Protein tyrosine and serine/threonine kinase 402 674 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2076 685 SUPERFAMILY Protein kinase-like (PK-like) 370 674 IPR011009 -
Lcy5g2076 685 PANTHER OS01G0750732 PROTEIN 287 677 IPR050885 -
Lcy5g2076 685 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 473 685 - -
Lcy5g2076 685 CDD CLECT 189 314 - -
Lcy5g2076 685 Gene3D Transferase(Phosphotransferase) domain 1 473 679 - -
Lcy5g2076 685 SUPERFAMILY C-type lectin-like 177 316 IPR016187 -
Lcy5g2076 685 ProSiteProfiles Protein kinase domain profile. 397 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2076 685 Pfam Lectin C-type domain 197 315 IPR001304 -
Lcy5g2076 685 FunFam C-type lectin receptor-like tyrosine-protein kinase 374 472 - -
Lcy5g2076 685 ProSiteProfiles C-type lectin domain profile. 186 315 IPR001304 -
Lcy5g2076 685 SMART CLECT_2 177 315 IPR001304 -
Lcy5g2076 685 ProSitePatterns Tyrosine protein kinases specific active-site signature. 519 531 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2076 685 SMART tyrkin_6 400 674 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Lcy5g2076 685 Gene3D Phosphorylase Kinase; domain 1 374 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2076 Lcy-Chr5:43878112 Lcy12g0562 Lcy-Chr12:6852684 7.15E-63 dispersed
Lcy5g2076 Lcy-Chr5:43878112 Lcy7g0396 Lcy-Chr7:3370972 1.31E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65972 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2076 - - - 0.0