Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2086 ATGAAATCGGGTGTCTTGTTCCCTGTTCTTCTTGTCCTCGTTCTGGGCTCGGCCGTCGTGTCGTGGGCCGACAAAGATTTCGAGGACGACGGCGAAGAATTCTCCAGCCTTGAGGTTCCGCAGTTGCAGGAGTTTTCACCTTTCGACGACTTTCTTTCGTATGGGTTCTACCGGAAAAGTTGCCCCGACGTCGACAAAATCATTCACCGCAAACTCAAGCAGTGGTTCGATAAAGATAACACCATCGCCGCCGGCATCATCAGACTCCACTTCCATGACTGCGTCGTCAGGGGCTGCGACGCTTCCATTCTTCTGGACTACGAGGGAAGCGAGAGGAGGGCTCCGGCGAGCAAGACGTTGAGAGGGTTCGAAGTGATCGACGATATCAAAGCCGAGTTAGAGAAAAAGTGCCCCAAAACAGTTTCTTGCGCAGATATTCTGACGGCCGCCGCCAGAGAAGCCACCGTTCTCGTGGGCGGCCCATATTGGATGGTCCCATATGGAAGAAGAGACGGAGTGGATTCCTTTGGCAAAGAAACTGGATTGGTTCCAATGGGTATTGAAGACATCACTTATCTCATTGAACGATACCAATCTCTCGACTTAAATCTCGTAGATTTGGTCGTTCTTTCAGGGGCACATACCATTGGAAGGGCAACATGCGGAGTGATTCAAAACAGGCTTTACAACTACAGCGCAACGGGCAAACCAGACCCATCACTGAGCCCAAAATACTTGAACTTCTTGAGAAGAAAATGCCGATGGGCCTCCGATTACGTGGACCTCGACGCCACGACGCCCAAGAAATTCGACAACGCCTACTACACCAACCTCCCCAAAAAGATGGGTCTTTTGTCGACCGACTCGGCTTTGTACACCGACCCAAGAACTTCCCCCATCGTCAAAGCCTTGGCCTATCAGCCCACCATTTTCCGCCAACAGTTTGCTGTGTCCATGGCCAAGCTCGGCAATGTTCAAGTTCTCACTGATCTTTTCGAAGGCGAGATTCGAACCAACTGCAGTTGTAGAAATTCTCCTTGA 1041 51.01 MKSGVLFPVLLVLVLGSAVVSWADKDFEDDGEEFSSLEVPQLQEFSPFDDFLSYGFYRKSCPDVDKIIHRKLKQWFDKDNTIAAGIIRLHFHDCVVRGCDASILLDYEGSERRAPASKTLRGFEVIDDIKAELEKKCPKTVSCADILTAAAREATVLVGGPYWMVPYGRRDGVDSFGKETGLVPMGIEDITYLIERYQSLDLNLVDLVVLSGAHTIGRATCGVIQNRLYNYSATGKPDPSLSPKYLNFLRRKCRWASDYVDLDATTPKKFDNAYYTNLPKKMGLLSTDSALYTDPRTSPIVKALAYQPTIFRQQFAVSMAKLGNVQVLTDLFEGEIRTNCSCRNSP 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43952781 43955630 - Maker00036164 Lcy5g2086 633901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2086 346 ProSiteProfiles Plant heme peroxidase family profile. 51 344 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 SUPERFAMILY Heme-dependent peroxidases 52 344 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
Lcy5g2086 346 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Haem peroxidase superfamily signature 263 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Haem peroxidase superfamily signature 83 97 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 CDD secretory_peroxidase 52 341 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy5g2086 346 Gene3D Peroxidase, domain 2 184 322 - -
Lcy5g2086 346 PANTHER PEROXIDASE 25-RELATED 53 340 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy5g2086 346 FunFam Peroxidase 55 195 - -
Lcy5g2086 346 ProSitePatterns Peroxidases active site signature. 83 94 IPR019794 GO:0004601(InterPro)
Lcy5g2086 346 Pfam Peroxidase 70 305 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 Gene3D - 55 344 - -
Lcy5g2086 346 PRINTS Plant peroxidase signature 61 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 85 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 261 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 277 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 PRINTS Plant peroxidase signature 317 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2086 346 FunFam Peroxidase 184 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2086 Lcy-Chr5:43952781 Lcy8g1666 Lcy-Chr8:43272899 6.24E-132 dispersed
Lcy5g2086 Lcy-Chr5:43952781 Lcy1g1007 Lcy-Chr1:8994019 2.03E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2086 K00430 - csv:101208042 598.971