Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2095 ATGGCAGCTTTTTCGTATCAATACCAACCATTTCTTCTTGACTCGATCTTCTTGCCCAACAATCCCTTAAAAATGGGTGGGTTTTTGGATGAGGCAAATTTCAACATGACCAATTGCTTCTCTCAATTCTTCCCTCAAGAACAACAACAACAACAACAGCCCATTCATCATTTTCCTGAGCTCTCTAAACAGAGCCCCGAATCTTCCACTTTGGTCGACAAATCCGACAGCGGCGAGCCGCCGGTCGGAAATCAGTTGAAGCCGGCCGTTACTGTAACGGTAACTTCCCCTTGTAAGAAAAGAAAGAGCCGGAATAACTCCTCCGCCAGCTCCGCCCAATCTAAGGGTACTACTGAGAGCAGTGGGAAGAAGCAGAAAAACAAAGGGGAATTAGATGAACGGAAAGAAGATCAAAAGGCGAAAACTGGGAAGAAAGAAGAGAAAAAAGTTTCAGAAGAAGGTGGTGCAACGACAGGTTACATTCATGTCAGAGCCAGGAGGGGCCAAGCCACAGATAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTCATGTTGGATGAAATTATTAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACGCCGCAACTACCGGCGATGGCGCAATGCAACGTGGTGCCGCCGCCGGCGTTGATCGACACGACCACTCCGACGACCCCAACAATCGCCGCCGCAAATAACTATCCTCTAATGGACCATTCAGCTAATTTGTTTCTACTTCAACAAGGGATGAGCCCAAATAACGCGTACTCTCAGTCGTCGTCTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGTGTTACTTCCATTAA 1062 46.42 MAAFSYQYQPFLLDSIFLPNNPLKMGGFLDEANFNMTNCFSQFFPQEQQQQQQPIHHFPELSKQSPESSTLVDKSDSGEPPVGNQLKPAVTVTVTSPCKKRKSRNNSSASSAQSKGTTESSGKKQKNKGELDERKEDQKAKTGKKEEKKVSEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCNVVPPPALIDTTTPTTPTIAAANNYPLMDHSANLFLLQQGMSPNNAYSQSSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44017037 44019287 + Maker00036509 Lcy5g2095 633910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2095 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 50 323 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy5g2095 353 SMART finulus 175 225 IPR011598 GO:0046983(InterPro)
Lcy5g2095 353 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983(InterPro)
Lcy5g2095 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 235 IPR036638 GO:0046983(InterPro)
Lcy5g2095 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983(InterPro)
Lcy5g2095 353 MobiDBLite consensus disorder prediction 60 177 - -
Lcy5g2095 353 MobiDBLite consensus disorder prediction 88 120 - -
Lcy5g2095 353 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Lcy5g2095 353 MobiDBLite consensus disorder prediction 60 75 - -
Lcy5g2095 353 CDD bHLH_AtBPE_like 159 244 - -
Lcy5g2095 353 Gene3D - 166 236 IPR036638 GO:0046983(InterPro)
Lcy5g2095 353 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2095 Lcy-Chr5:44017037 Lcy9g2004 Lcy-Chr9:44925824 6.01E-37 dispersed
Lcy2g0024 Lcy-Chr2:194519 Lcy5g2095 Lcy-Chr5:44017037 1.25E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20152 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2095 - - - 0.0