Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2095 | ATGGCAGCTTTTTCGTATCAATACCAACCATTTCTTCTTGACTCGATCTTCTTGCCCAACAATCCCTTAAAAATGGGTGGGTTTTTGGATGAGGCAAATTTCAACATGACCAATTGCTTCTCTCAATTCTTCCCTCAAGAACAACAACAACAACAACAGCCCATTCATCATTTTCCTGAGCTCTCTAAACAGAGCCCCGAATCTTCCACTTTGGTCGACAAATCCGACAGCGGCGAGCCGCCGGTCGGAAATCAGTTGAAGCCGGCCGTTACTGTAACGGTAACTTCCCCTTGTAAGAAAAGAAAGAGCCGGAATAACTCCTCCGCCAGCTCCGCCCAATCTAAGGGTACTACTGAGAGCAGTGGGAAGAAGCAGAAAAACAAAGGGGAATTAGATGAACGGAAAGAAGATCAAAAGGCGAAAACTGGGAAGAAAGAAGAGAAAAAAGTTTCAGAAGAAGGTGGTGCAACGACAGGTTACATTCATGTCAGAGCCAGGAGGGGCCAAGCCACAGATAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTCATGTTGGATGAAATTATTAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACGCCGCAACTACCGGCGATGGCGCAATGCAACGTGGTGCCGCCGCCGGCGTTGATCGACACGACCACTCCGACGACCCCAACAATCGCCGCCGCAAATAACTATCCTCTAATGGACCATTCAGCTAATTTGTTTCTACTTCAACAAGGGATGAGCCCAAATAACGCGTACTCTCAGTCGTCGTCTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGTGTTACTTCCATTAA | 1062 | 46.42 | MAAFSYQYQPFLLDSIFLPNNPLKMGGFLDEANFNMTNCFSQFFPQEQQQQQQPIHHFPELSKQSPESSTLVDKSDSGEPPVGNQLKPAVTVTVTSPCKKRKSRNNSSASSAQSKGTTESSGKKQKNKGELDERKEDQKAKTGKKEEKKVSEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCNVVPPPALIDTTTPTTPTIAAANNYPLMDHSANLFLLQQGMSPNNAYSQSSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44017037 | 44019287 | + | Maker00036509 | Lcy5g2095 | 633910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2095 | 353 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 50 | 323 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lcy5g2095 | 353 | SMART | finulus | 175 | 225 | IPR011598 | GO:0046983(InterPro) | |
Lcy5g2095 | 353 | Pfam | Helix-loop-helix DNA-binding domain | 173 | 220 | IPR011598 | GO:0046983(InterPro) | |
Lcy5g2095 | 353 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 167 | 235 | IPR036638 | GO:0046983(InterPro) | |
Lcy5g2095 | 353 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 219 | IPR011598 | GO:0046983(InterPro) | |
Lcy5g2095 | 353 | MobiDBLite | consensus disorder prediction | 60 | 177 | - | - | |
Lcy5g2095 | 353 | MobiDBLite | consensus disorder prediction | 88 | 120 | - | - | |
Lcy5g2095 | 353 | FunFam | Basic helix-loop-helix transcription factor | 166 | 238 | - | - | |
Lcy5g2095 | 353 | MobiDBLite | consensus disorder prediction | 60 | 75 | - | - | |
Lcy5g2095 | 353 | CDD | bHLH_AtBPE_like | 159 | 244 | - | - | |
Lcy5g2095 | 353 | Gene3D | - | 166 | 236 | IPR036638 | GO:0046983(InterPro) | |
Lcy5g2095 | 353 | MobiDBLite | consensus disorder prediction | 121 | 153 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2095 | Lcy-Chr5:44017037 | Lcy9g2004 | Lcy-Chr9:44925824 | 6.01E-37 | dispersed | |
Lcy2g0024 | Lcy-Chr2:194519 | Lcy5g2095 | Lcy-Chr5:44017037 | 1.25E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20152 | None | None | None | None | Lcy | TF |
Pathway information
