Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2098 ATGGGTTGCGTTCTTGGCAGACAACCCGCCGACGCTCCCCGTCGCTGCCGGAGCACCGATCACCACTCTCGTGTCGAAGGACTTAATGGCGAGAGACTAAACAAACAGACGACTTTGGCGGAAAAGCAGGGACTGAGGCAGGACGTCGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGGGCCCTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCCGGCGAGGTGATTCAAGGCTGGACGCCTCGTCGAGCCAATACATTTGAGAAGCTTGCTAAGATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTGGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTTTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACCTTTTTTGATCCTGAGCAGAGTCAGCATATGACTAGTCGAGTTGTAACTCTTTGGTACCGTCCACCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGATTGATCTCTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGCAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCAACTGAGGATTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACGTTCAAGGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTGCTACCGAACCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGGGAAAGCTACAGCTATCGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTAGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAAAGCAAATGCCAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGCAGAGGGGCCATTTATCATTTGGCGCAGCTGATACTTCATTCAGCTCGTCCATTTTTAATTCTAAGTCTGGATCAGTTAAAAGTACAGGAGCTCCTGGAGGACCTTCTCGGAGGAAGAAAGCCGATAGAGATAACCCCTCGGTATCTTCATCTCGTAAATTCATCCGTGCGCTGAAGCCATCAATTGGGTTATCAATGGATCTATTGTTTAGAGGTAAATAA 1674 47.67 MGCVLGRQPADAPRRCRSTDHHSRVEGLNGERLNKQTTLAEKQGLRQDVDSFSVERRRPSPGPCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQSQHMTSRVVTLWYRPPELLLGATLYGIGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFATEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKATAIDGGGRRVRVRDRVSRAVPAPEANAEIQANLDRWRNVTKANAKSKSEKFPPPHQDGAVGYPPHEQRGHLSFGAADTSFSSSIFNSKSGSVKSTGAPGGPSRRKKADRDNPSVSSSRKFIRALKPSIGLSMDLLFRGK 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44056799 44061221 + Maker00036626 Lcy5g2098 633913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2098 557 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Lcy5g2098 557 MobiDBLite consensus disorder prediction 459 490 - -
Lcy5g2098 557 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2098 557 SUPERFAMILY Protein kinase-like (PK-like) 87 382 IPR011009 -
Lcy5g2098 557 MobiDBLite consensus disorder prediction 502 537 - -
Lcy5g2098 557 MobiDBLite consensus disorder prediction 1 23 - -
Lcy5g2098 557 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2098 557 PANTHER CELL DIVISION PROTEIN KINASE 93 378 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy5g2098 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2098 557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Lcy5g2098 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524(InterPro)
Lcy5g2098 557 Gene3D Transferase(Phosphotransferase) domain 1 177 417 - -
Lcy5g2098 557 MobiDBLite consensus disorder prediction 35 67 - -
Lcy5g2098 557 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
Lcy5g2098 557 CDD STKc_CDK9_like 94 378 - -
Lcy5g2098 557 SMART serkin_6 94 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1101 Lcy-Chr1:10058224 Lcy5g2098 Lcy-Chr5:44056799 1.80E-133 dispersed
Lcy4g1937 Lcy-Chr4:45705740 Lcy5g2098 Lcy-Chr5:44056799 1.01E-214 dispersed
Lcy4g2175 Lcy-Chr4:48301058 Lcy5g2098 Lcy-Chr5:44056799 6.01E-34 dispersed
Lcy5g2098 Lcy-Chr5:44056799 Lcy6g0602 Lcy-Chr6:5733147 1.01E-216 dispersed
Lcy5g2098 Lcy-Chr5:44056799 Lcy2g1834 Lcy-Chr2:31184311 2.85E-234 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65974 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2098 K08819 - csv:101205716 981.474