Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2098 | ATGGGTTGCGTTCTTGGCAGACAACCCGCCGACGCTCCCCGTCGCTGCCGGAGCACCGATCACCACTCTCGTGTCGAAGGACTTAATGGCGAGAGACTAAACAAACAGACGACTTTGGCGGAAAAGCAGGGACTGAGGCAGGACGTCGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGGGCCCTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCCGGCGAGGTGATTCAAGGCTGGACGCCTCGTCGAGCCAATACATTTGAGAAGCTTGCTAAGATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTGGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTTTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACCTTTTTTGATCCTGAGCAGAGTCAGCATATGACTAGTCGAGTTGTAACTCTTTGGTACCGTCCACCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGATTGATCTCTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGCAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCAACTGAGGATTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACGTTCAAGGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTGCTACCGAACCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGGGAAAGCTACAGCTATCGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTAGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAAAGCAAATGCCAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGCAGAGGGGCCATTTATCATTTGGCGCAGCTGATACTTCATTCAGCTCGTCCATTTTTAATTCTAAGTCTGGATCAGTTAAAAGTACAGGAGCTCCTGGAGGACCTTCTCGGAGGAAGAAAGCCGATAGAGATAACCCCTCGGTATCTTCATCTCGTAAATTCATCCGTGCGCTGAAGCCATCAATTGGGTTATCAATGGATCTATTGTTTAGAGGTAAATAA | 1674 | 47.67 | MGCVLGRQPADAPRRCRSTDHHSRVEGLNGERLNKQTTLAEKQGLRQDVDSFSVERRRPSPGPCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQSQHMTSRVVTLWYRPPELLLGATLYGIGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFATEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKATAIDGGGRRVRVRDRVSRAVPAPEANAEIQANLDRWRNVTKANAKSKSEKFPPPHQDGAVGYPPHEQRGHLSFGAADTSFSSSIFNSKSGSVKSTGAPGGPSRRKKADRDNPSVSSSRKFIRALKPSIGLSMDLLFRGK | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44056799 | 44061221 | + | Maker00036626 | Lcy5g2098 | 633913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2098 | 557 | FunFam | probable serine/threonine-protein kinase At1g54610 | 81 | 176 | - | - | |
Lcy5g2098 | 557 | MobiDBLite | consensus disorder prediction | 459 | 490 | - | - | |
Lcy5g2098 | 557 | ProSiteProfiles | Protein kinase domain profile. | 94 | 378 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g2098 | 557 | SUPERFAMILY | Protein kinase-like (PK-like) | 87 | 382 | IPR011009 | - | |
Lcy5g2098 | 557 | MobiDBLite | consensus disorder prediction | 502 | 537 | - | - | |
Lcy5g2098 | 557 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lcy5g2098 | 557 | Pfam | Protein kinase domain | 94 | 378 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g2098 | 557 | PANTHER | CELL DIVISION PROTEIN KINASE | 93 | 378 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lcy5g2098 | 557 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 214 | 226 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g2098 | 557 | Gene3D | Phosphorylase Kinase; domain 1 | 81 | 176 | - | - | |
Lcy5g2098 | 557 | ProSitePatterns | Protein kinases ATP-binding region signature. | 100 | 123 | IPR017441 | GO:0005524(InterPro) | |
Lcy5g2098 | 557 | Gene3D | Transferase(Phosphotransferase) domain 1 | 177 | 417 | - | - | |
Lcy5g2098 | 557 | MobiDBLite | consensus disorder prediction | 35 | 67 | - | - | |
Lcy5g2098 | 557 | FunFam | probable serine/threonine-protein kinase At1g54610 | 177 | 418 | - | - | |
Lcy5g2098 | 557 | CDD | STKc_CDK9_like | 94 | 378 | - | - | |
Lcy5g2098 | 557 | SMART | serkin_6 | 94 | 378 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1101 | Lcy-Chr1:10058224 | Lcy5g2098 | Lcy-Chr5:44056799 | 1.80E-133 | dispersed | |
Lcy4g1937 | Lcy-Chr4:45705740 | Lcy5g2098 | Lcy-Chr5:44056799 | 1.01E-214 | dispersed | |
Lcy4g2175 | Lcy-Chr4:48301058 | Lcy5g2098 | Lcy-Chr5:44056799 | 6.01E-34 | dispersed | |
Lcy5g2098 | Lcy-Chr5:44056799 | Lcy6g0602 | Lcy-Chr6:5733147 | 1.01E-216 | dispersed | |
Lcy5g2098 | Lcy-Chr5:44056799 | Lcy2g1834 | Lcy-Chr2:31184311 | 2.85E-234 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65974 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2098 | K08819 | - | csv:101205716 | 981.474 |