Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2120 ATGGCGACGACGACCACCAGTCTTTGCGGCGGCGGCGGCGGTGGTGGCGGTGCAGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAAGAGCCTCAACACCCCGAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTCGACAATCGTCTCTCTAATATCACCAGTTTAGTCAACAGTGGGGATTCGAAGAGCGAGGCGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGGTGGGATTCTGGTCATGGAGCTTCTAGGAACTCCCTTTATTGGGAGGACTCGCCGGATGAGGCGGCTGAGTATTTATCGGCGGTTGATGATATCATTCAGTGGATCGACGACTTGTCAATTCGTTCTGATTCGGCGGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGACGAGTTTCGTCATATCTTGATTCGGAGCACCGTTCCTTTCGATGCTGAGCACCTCTACGGTTCAATTCGGAGGGTTTCCCTCTCTTTCGCTTCACACGACGAAAATTCAGATGAATTTGAGTCGTTTGCCGATGCTGACCGTGGTTCGGGAATTTTCCATGAGCGTGGTGTCAGTTTGGGCGATGATTTGCGGGTCGATTTGATCCATCCTGACGCCGTCGATGATTTGAAAGAGATCGCGGACCGGATGATTCGGTCTGGATACGAAAAGGAGTGTGTTAATGCCTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAGAAGCTAAGTATTGAGGATGTCCAGAAAATTGACTGGAAAATTTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTGAAGGTCAGTGTTCGAGTACTTTTGACGGGCGAGAAGCGATTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAAGAAGTTTGTTTCAATGAGACTGCAAAAGGATGCATCCGGCAATTACTGAATTTTGCAGAGGCCATTGCCATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATCCTAGATATGTATGAAGCTCTGGCATACGTTTTACCAGACTTGCAGGCTATGGTCACTGATGAATTTGTGATCGAGGAGGCAAAAGGAGTGCTTTCTAGGCTGGGAGAGGCCGCGAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGGAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTGATGAATTACTTAAGATTGCTGGTGGTTTATAGTAAGACTCTGGATGAACTTTTAGAAGGCGAGGATGAGGATTTGCATCATCTAGGTGATGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCTCCTTTAGCTCGTCGACTGTTTTCATTGATATCATCTCTGGAGACGAATCTTGAGAGAAAATCCAAACTTTATGGTGATGATTCTATACAATATATATTTCTCATGAATAATATACAATACATCGTGCAGAAAGTGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGCAAGCGCCGAGGCCAAGTTCGCATATATGCAACGAATTATCTCAGGGCTTCTTGGGGCAAACTGTTATCTTTCTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAACCTATAGAATTCAGACAGCTTGGAAGGTTGCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTATCGGCAAAGGTGTTGCCTGCATATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATACAAGACATCCTGGGAGTTTGGACACCCCCCCGCCCCCGGGGGCGGAAAGTGCTAGATCTTTTAAGTGGTTGTATTTGGCTAATGTGTTTCATTGTACTTCTGTTGGTTTTCTCTCATGTGGTCTTTTCAGAAAAGAGTTTTTGCTGCAGCAATCTGCTTTAAGCTCTTGTGTTTCTTCATTCTATGATGGAATTCTGATGTCTTGTACTGATATGAAGATCCTATATGTGCTTTGGCTTTGCCTTGCAAGACACCTTCATTTGCCTTTTAAGTCATCAACTACTTGCATGAAGGCTTAA 2157 45.48 MATTTTSLCGGGGGGGGAEDRVMATAQQIVKSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKSEADRFEAAEKVILRWDSGHGASRNSLYWEDSPDEAAEYLSAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHILIRSTVPFDAEHLYGSIRRVSLSFASHDENSDEFESFADADRGSGIFHERGVSLGDDLRVDLIHPDAVDDLKEIADRMIRSGYEKECVNAYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVTDEFVIEEAKGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDELLEGEDEDLHHLGDDGADNLELETMSPLARRLFSLISSLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEETYRIQTAWKVADAQLREELRISVSAKVLPAYRAFLGRHGSQLENTRHPGSLDTPPPPGAESARSFKWLYLANVFHCTSVGFLSCGLFRKEFLLQQSALSSCVSSFYDGILMSCTDMKILYVLWLCLARHLHLPFKSSTTCMKA 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44244463 44247884 + Maker00036441 Lcy5g2120 633935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2120 718 Gene3D Exocyst complex component Exo70 89 626 - -
Lcy5g2120 718 Pfam Exo70 exocyst complex subunit C-terminal 280 620 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy5g2120 718 Pfam Exocyst complex component Exo70 N-terminal 73 153 - -
Lcy5g2120 718 PANTHER EXOCYST COMPLEX PROTEIN EXO70 29 623 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy5g2120 718 SUPERFAMILY Cullin repeat-like 70 623 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0045 Lcy-Chr11:447898 Lcy5g2120 Lcy-Chr5:44244463 4.01E-117 dispersed
Lcy13g0060 Lcy-Chr13:674209 Lcy5g2120 Lcy-Chr5:44244463 2.34E-133 dispersed
Lcy5g0233 Lcy-Chr5:2247427 Lcy5g2120 Lcy-Chr5:44244463 8.08E-85 dispersed
Lcy5g2120 Lcy-Chr5:44244463 Lcy5g2492 Lcy-Chr5:47732169 4.43E-110 dispersed
Lcy2g0063 Lcy-Chr2:462483 Lcy5g2120 Lcy-Chr5:44244463 1.75E-300 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2120 K07195 - csv:101212753 1100.5