Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2123 ATGGCGGTCTCATTGAGCGACGTTAAGTCGGCAGCCGGTCTGAAAAATCTCGATGACTACCTGCTCAGTCGAAGTTACATTTCTGGGTATCAGGCTTCAAAGGATGATATCGCTGTTTACGAAGCTCTCTCCAAACCCGTTTCCAGCGAATATGTCAACGTAGCTAGGTGGAGCAGCCACATCGAAGCACTCTTGAGAGTCTCGGCTGTATTTGGAGAGGGTTCTGGCGTTAAGTTCGCAGAAGCAGTTGCAACCCCACCGGCTGCGGATGCAAAGGCTAGCGCTGATGATGATGATGACGATGACATGGATCTGTTTGGTGAAGAAACTGAAGAGGAGAAGAAGGCTGCTGAAGAGCGTGCAGCCGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAGTCATCAGTTCTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAGGCGTTCATATGGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATCAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAGCATCTGACAGTTGAACCCATAAACGAACATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATCTGTAAGTCCCAAGTTTTATTTTGTTACACAAGCTGA 708 46.89 MAVSLSDVKSAAGLKNLDDYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVARWSSHIEALLRVSAVFGEGSGVKFAEAVATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVHMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKICKSQVLFCYTS 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44258030 44260965 - Maker00036666 Lcy5g2123 633938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2123 235 FunFam Elongation factor 1-delta 1 3 78 - -
Lcy5g2123 235 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2123 235 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2123 235 Coils Coil 107 127 - -
Lcy5g2123 235 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Lcy5g2123 235 FunFam Elongation factor 1-beta 1 like 129 224 - -
Lcy5g2123 235 MobiDBLite consensus disorder prediction 94 108 - -
Lcy5g2123 235 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2123 235 SUPERFAMILY GST C-terminal domain-like 10 69 IPR036282 -
Lcy5g2123 235 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2123 235 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Lcy5g2123 235 MobiDBLite consensus disorder prediction 88 114 - -
Lcy5g2123 235 CDD EF1B 133 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2123 235 Gene3D - 2 75 - -
Lcy5g2123 235 Gene3D - 128 224 IPR014717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2123 Lcy-Chr5:44258030 Lcy5g2126 Lcy-Chr5:44292695 1.32E-106 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2123 K03232 - csv:101215489 323.939