Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2123 | ATGGCGGTCTCATTGAGCGACGTTAAGTCGGCAGCCGGTCTGAAAAATCTCGATGACTACCTGCTCAGTCGAAGTTACATTTCTGGGTATCAGGCTTCAAAGGATGATATCGCTGTTTACGAAGCTCTCTCCAAACCCGTTTCCAGCGAATATGTCAACGTAGCTAGGTGGAGCAGCCACATCGAAGCACTCTTGAGAGTCTCGGCTGTATTTGGAGAGGGTTCTGGCGTTAAGTTCGCAGAAGCAGTTGCAACCCCACCGGCTGCGGATGCAAAGGCTAGCGCTGATGATGATGATGACGATGACATGGATCTGTTTGGTGAAGAAACTGAAGAGGAGAAGAAGGCTGCTGAAGAGCGTGCAGCCGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAGTCATCAGTTCTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAGGCGTTCATATGGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTCCCTGTTGGATATGGTATCAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAGCATCTGACAGTTGAACCCATAAACGAACATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATCTGTAAGTCCCAAGTTTTATTTTGTTACACAAGCTGA | 708 | 46.89 | MAVSLSDVKSAAGLKNLDDYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVARWSSHIEALLRVSAVFGEGSGVKFAEAVATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVHMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKICKSQVLFCYTS | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44258030 | 44260965 | - | Maker00036666 | Lcy5g2123 | 633938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2123 | 235 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
Lcy5g2123 | 235 | Pfam | EF-1 guanine nucleotide exchange domain | 137 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Lcy5g2123 | 235 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 99 | 107 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Lcy5g2123 | 235 | Coils | Coil | 107 | 127 | - | - | |
Lcy5g2123 | 235 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 224 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Lcy5g2123 | 235 | FunFam | Elongation factor 1-beta 1 like | 129 | 224 | - | - | |
Lcy5g2123 | 235 | MobiDBLite | consensus disorder prediction | 94 | 108 | - | - | |
Lcy5g2123 | 235 | SMART | EF1_GNE_2 | 135 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Lcy5g2123 | 235 | SUPERFAMILY | GST C-terminal domain-like | 10 | 69 | IPR036282 | - | |
Lcy5g2123 | 235 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 213 | 224 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Lcy5g2123 | 235 | SUPERFAMILY | eEF-1beta-like | 132 | 224 | IPR036219 | - | |
Lcy5g2123 | 235 | MobiDBLite | consensus disorder prediction | 88 | 114 | - | - | |
Lcy5g2123 | 235 | CDD | EF1B | 133 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Lcy5g2123 | 235 | Gene3D | - | 2 | 75 | - | - | |
Lcy5g2123 | 235 | Gene3D | - | 128 | 224 | IPR014717 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2123 | Lcy-Chr5:44258030 | Lcy5g2126 | Lcy-Chr5:44292695 | 1.32E-106 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2123 | K03232 | - | csv:101215489 | 323.939 |