Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2126 ATGGCGGTCGCATTACATGATGTCAAGTCGGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCTAAGGATGATGTTGCCGTTTACGAAGCTCTCTCCAAACCCATATCCAGCGAATGTGTTAACGTGTCCAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGATCGGGCGTTAAGTTCGGATCAGCAGAAGCAATTGCAACCCCACCGGCCGCGGACGCTAAGGCTGCTGCTGCCGCTGATGATGATGACGACGATGATATGGATCTATTTGGTGAGGAGACTGAAGAGGAAAAGAAGGCTGCAGAGGAGCGTGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAGGAGTCTGGCAAGTCATCAGTTCTGATGGACATTAAGCCTTGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAACTTGTCCCTGTTGGATACGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTCTCTGTTGACAATCTCATCGAGGAACGTCTGACCGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATATAA 687 47.74 MAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVAVYEALSKPISSECVNVSRWSNHIEALLRVSAVFGEGSGVKFGSAEAIATPPAADAKAAAAADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKI 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44292695 44294719 + Maker00036406 Lcy5g2126 633941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2126 228 SUPERFAMILY eEF-1beta-like 136 228 IPR036219 -
Lcy5g2126 228 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 228 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Lcy5g2126 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 103 111 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2126 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 217 228 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2126 228 Coils Coil 111 131 - -
Lcy5g2126 228 FunFam Elongation factor 1-beta 1 like 133 228 - -
Lcy5g2126 228 Gene3D - 3 75 - -
Lcy5g2126 228 MobiDBLite consensus disorder prediction 98 112 - -
Lcy5g2126 228 Pfam EF-1 guanine nucleotide exchange domain 141 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2126 228 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Lcy5g2126 228 Gene3D - 132 228 IPR014717 -
Lcy5g2126 228 SMART EF1_GNE_2 139 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2126 228 MobiDBLite consensus disorder prediction 92 118 - -
Lcy5g2126 228 CDD EF1B 137 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy5g2126 228 FunFam Elongation factor 1-delta 1 3 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2123 Lcy-Chr5:44258030 Lcy5g2126 Lcy-Chr5:44292695 1.32E-106 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2126 K03232 - csv:101215827 330.102