Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2139 ATGGCTAATCGAGATGCAAACCTCAACGCGGCCGCCCATTCTGTTGATCCCCGGAGCGGTTTCTGTCCTCAAACCAAGATTTTCCATAGCCTCCGACCACCGCTCTCGCTTCCGCCGATATCTCAGCCTCTCACCGTTGCCGGACACGCCCTTTCTCTTCTCCGATCATCCCCTCCTCCGGCGAACACTACCGCTCTCGTCGACCTCGACTCCGGCGTCAATGTCTCCTACGGCCTTTTCCTCCGTCAAATCCGAAACCTCGCCTCTAACCTTAGAGCTCTTTACTCCCTCTCCAATGGTCAAGTGGCTTTTATTCTTTCGCCGACTAACCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTCATTGTCTCTCCGGCTAATCCCATTAGTTCCGAATCGGAGATTGCTCACCAGGTTCGACTCTGTAAACCGGTCATTGCCTTCGTTACGTCCTCGACGGCGTCCAAGCTCCCGAGGCTTCTACTTGGCACTGTTCTGATAGATTCGCCTGAGTTTCTATCTATGATGACTGAAAATAGTCTATCGGATGGAGTGGATGATGGGGTTGCCGACGTCAAAATCAATCAAAACGACTCGGCGGCGATTCTGTACTCGTCAGGGACTACCGGACGAGTGAAAGGCGTCGTGCTGTCTCACCGGAACCTCATATGGTCGATTTCTGGGGTTCACAAGTTAGAGACGACAGCCAACGAAAGAGAGATGGAGCCACATCCTGTCTCTCTGTGTTTATTACCTCTGTTCCATGTTTTCGGTTTCTATTTAATGATTCGATCGATTTCACTAGGCGATACGTTGGTTCTGATGCGAAAGTTCGACTTCGAGGGGATGTTAAGAGCAGTGGAGAAGTATAGGGTCACATACATTCCGGTTTCTCCGCCGTTGGTGTTGGCGATGGCGAAGTCGGAGCTGGTGGCGAAGTACGACCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCCCTTGGGAAAGAAGTCATCGATAAATTCCATGATAAGCTACCCAGCGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGCAGCGGCATCAAGGACTGTGGGACCTGAAGAATGCAGTAATACAAGTTCAGTAGGTCGCCTTTCTGAAAATCTGGAAGCCAAGATAGTGGATCCTTCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAGAAGGCAACTGCTGAAACCTTGCATCCAGAGGGATGGTTAAAGACTGGCGATCTTTGCTATTTTGATTCTGATGGATTCCTCTACATTGTCGATAGATTAAAAGAATTGATCAAGTACAAAGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCTATCCAACCCCGAGATCACCGATGCCGCTGTGATACCCTATCCTGACGAGGAAGCAGGACAGATTCCTATGGCTTATGTGGTTAGAAAGCCTGGAAGCAAAATCAGCGAGGCCCAAGTTGCCCCATACAAGAAAATCCGGCGAGTGTCTTTTGTCAACACGATCCCGAAATCGCCTGCAGGGAAGATTCTTAGGAGGGAACTTTATCCGCGTGCTGGATCACGCATCACTTTCTCCGAGTTCACTTCCATGGCGGATCCGAATCCAAACTCCAACGCCGCCCATTTTGTTGACCGCCGGAGCGGTTTCTGTCCTGAAACGAAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCAATATCTCAGCCTCTCTCCATCACTGAACACGTCCTTTCTCTCCTCCAATCATCTCCTCCTCCGGCAACCGCCACCGTTCTCGTTGACTCCAACTCCGGCGTCCATCTCTCCTACGCCATTTTCCTCCGTCAAATTCGAATCCTCGCCGCTAATCTTAGAGCCCTAACCTCCCTCTCCAATGGTCAAGTGGCGTTTATTCTTGCACCGACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTTGTTATCTCTCCGGCTAATCCAACTGGTTCTCTATCGGAGATTTCTCATCAGGTTCGACTCTGTAAACCGGCCATTGCCTTCGCTACATCCTCAATGGCGTCCAAGCTCCCGAGGCTTCGACTCGGCACCGTCCTGATCGATTCGCCTGAGTTTCTCTCTATGATGACGGAAATCAATCGATCTGATGGAAGCGATGATGGTTTTCTCGACGGAAAAATCAATCAATCCGACTCGGCGGCGATTCTGTACTCGTCTGGTACTACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGGAACCTTATTGTGGTGAACTCTGGGCCTCGTGCTCTTCAATCGGTAGTCGAGGAAGGAGAGATGGAGCCACGTCCGGTGTCTCTGTGTTTGTTGCCACTGTTCCATGTTTTCGGATTCGTGATGTTGATTCGAGCGATTTCGCGAGGCGAAACGTTGGTTCTGATGCAGAAATTCGACTTCGAGGCGATGTTGAGAGCGGTGGAGATGTTTAGGGTTATGTATATCCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAGTCGGAGCTGGTGGCGAAATTCGATCTCAGTTCTCTTCAAATTTTGGGATGTGGCGGCGCTCCTCTTGGGAAAGAAGTCATCGATAAATTCCATGAGAAGCTGCCCAATGTTGAAATTTTGCAGGGATATGGCTTGACAGAGAGTACAGCAGCAGCAGCAAGGACTCTGGGGCCTGAGGAAAGCAGTAATTCAAGATCAGTAGGTCGCCTATCTGAAAGTATGGAAGCCAAGATAGTGGATCCTTCTTCCGGAGAGGCCTTACCTCCTGGCCACAGTGGAGAGCTCTGGCTGCGAGGTCCCGTAGTCATGAAAGGTTATTTTGGAGATGGCAAGGCAACTGTCGAAACCTTGCATCCAGAGGGATGGCTAAAGACTGGCGATCTTTGTTATTTTGATTCTGAAGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCAACCCTGAAATCATCGACGCTGCTGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCAATGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCACTGAGGCTCAAGTTGCACCATACAAGAAAATTCGACGAGTGTGTTTCATCAACGCAATCCCCAAATCGTCTGCAGGGAAGATCCTGAGGAGGGAGCTTGCCAAACATGCTCTCTCTCATGGTTCAAATAAGTTGTAA 3333 49.74 MANRDANLNAAAHSVDPRSGFCPQTKIFHSLRPPLSLPPISQPLTVAGHALSLLRSSPPPANTTALVDLDSGVNVSYGLFLRQIRNLASNLRALYSLSNGQVAFILSPTNLQVPVLYFALLSLGVIVSPANPISSESEIAHQVRLCKPVIAFVTSSTASKLPRLLLGTVLIDSPEFLSMMTENSLSDGVDDGVADVKINQNDSAAILYSSGTTGRVKGVVLSHRNLIWSISGVHKLETTANEREMEPHPVSLCLLPLFHVFGFYLMIRSISLGDTLVLMRKFDFEGMLRAVEKYRVTYIPVSPPLVLAMAKSELVAKYDLSSLQILGCGGAPLGKEVIDKFHDKLPSVEIIQGYGLTESSAAASRTVGPEECSNTSSVGRLSENLEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLLSNPEITDAAVIPYPDEEAGQIPMAYVVRKPGSKISEAQVAPYKKIRRVSFVNTIPKSPAGKILRRELYPRAGSRITFSEFTSMADPNPNSNAAHFVDRRSGFCPETKIFHSLRPPLSLPPISQPLSITEHVLSLLQSSPPPATATVLVDSNSGVHLSYAIFLRQIRILAANLRALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVVISPANPTGSLSEISHQVRLCKPAIAFATSSMASKLPRLRLGTVLIDSPEFLSMMTEINRSDGSDDGFLDGKINQSDSAAILYSSGTTGRVKGVLLSHRNLIVVNSGPRALQSVVEEGEMEPRPVSLCLLPLFHVFGFVMLIRAISRGETLVLMQKFDFEAMLRAVEMFRVMYIPVSPPLVVAMAKSELVAKFDLSSLQILGCGGAPLGKEVIDKFHEKLPNVEILQGYGLTESTAAAARTLGPEESSNSRSVGRLSESMEAKIVDPSSGEALPPGHSGELWLRGPVVMKGYFGDGKATVETLHPEGWLKTGDLCYFDSEGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNITEAQVAPYKKIRRVCFINAIPKSSAGKILRRELAKHALSHGSNKL 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44428060 44437951 + Maker00036252 Lcy5g2139 633954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2139 1110 CDD 4CL 38 542 - -
Lcy5g2139 1110 ProSitePatterns Putative AMP-binding domain signature. 762 773 IPR020845 -
Lcy5g2139 1110 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 542 - GO:0016405(PANTHER)
Lcy5g2139 1110 Gene3D - 1012 1104 IPR045851 -
Lcy5g2139 1110 Gene3D - 456 547 IPR045851 -
Lcy5g2139 1110 SUPERFAMILY Acetyl-CoA synthetase-like 61 548 - -
Lcy5g2139 1110 SUPERFAMILY Acetyl-CoA synthetase-like 614 1104 - -
Lcy5g2139 1110 CDD 4CL 599 1098 - -
Lcy5g2139 1110 Gene3D - 39 455 IPR042099 -
Lcy5g2139 1110 Gene3D - 588 1011 IPR042099 -
Lcy5g2139 1110 Pfam AMP-binding enzyme C-terminal domain 1025 1092 IPR025110 -
Lcy5g2139 1110 Pfam AMP-binding enzyme C-terminal domain 469 536 IPR025110 -
Lcy5g2139 1110 FunFam Long-chain-fatty-acid--CoA ligase FadD 592 1011 - -
Lcy5g2139 1110 Pfam AMP-binding enzyme 60 417 IPR000873 -
Lcy5g2139 1110 Pfam AMP-binding enzyme 618 974 IPR000873 -
Lcy5g2139 1110 FunFam Long-chain-fatty-acid--CoA ligase FadD 38 455 - -
Lcy5g2139 1110 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2139 Lcy-Chr5:44428060 Lcy7g0614 Lcy-Chr7:5582729 1.88E-120 dispersed
Lcy5g2139 Lcy-Chr5:44428060 Lcy5g2140 Lcy-Chr5:44438759 3.78E-253 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2139 K01904 - csv:101211791 884.404