Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2140 ATGGCAGATCGGAAGCCGAACTTCAACACGGGTCATTTCATCGATCCTCGAAGCGGTTTCTGTCCGGAAACGAAGATTTTCCACAGCCTCCGACCACCGCTCTCACGTCCGCCAATATCTCAGCCTCTCTCCATCACTCAACACGCCCTTCCTCTCCTCCAATCATCTGCTCCTCCGGCAAACGCCACCGTTCTGGTTGACTCCAACTCCGTTGTCCATCTCTCCTACGCCATTTTTCTCCGTCAAATTCGAATCCTCGCCGCTAATCTTAAAGCCCTAACCTCCCTCTCCAATGGTCAAGTGGCGTTTATTCTCGCACCGACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTTGTTATATCTCCGGCTAATCCAACCGGTTCCGATTCGGAGATCGCTCATCAGGTTCAACTCTGTAAACCGGTAATTGCCTTTGCTACGTCCTCAACGGCGTCCAAGCTCCCTCGGGAGCTTGGGAAAATTCTGATAGATTCGCCGGAGTTTTTCTCTATGATGAGTGAAAGCAATCGATTGGATGGAATAGACTACGGTGCTGCCAATGTCAAAATCAATCAATCCGACGCGGCGGCGATTCTGTACTCATCAGGCACTACAGGGCGAGTGAAAGGCGTCCTACTGACGCACCGGAACTTCGTTGCGGCAAACTCTGGGGTTCATGGTTTACAATTGACGGCCAACTCAGAAGAGACGGAGCGACATCCTGTGTTTTTGTGTCTGTTGCCTCTGTTCCATAAGTATAAGGTCGCGTGCATATCGGTTACTCCGCCGCTCGTGGTGGCGTTGGCTAAATCGGAGTTGGTGGCGAAGTACAACCTCAGTTCTCTTCGAATTTTGGGATGCGGCGGCGCTCCTCTTGGGAAAGAAGTCGTTGAGAAATTCCATTATAAGTTTCCCAACGTTGAAATTTTACAGGGATATGGCTTGACAGAGAGTACAGTTGTAGCACGGACTTTGGGGTGTGAGGAAAGCAAGAACACAAGTTCAGTAGGCCGCCTAGCTGAAGGTGTTGAAGCCAAGATTGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCAGAAAGGAGAGCTTTGGTTGGGAGGTCCAGCAATCATGAAAGGTTTGCCATATTGTTCTAATGTTTGTCAAGCTTCATCATATTTGAAACTTGGAATCACACAATATGCCAAAACTCATACTGGTGATCTTTGCTACATTGATTCTGATGGGTTCCTCTACATTGTGGATAGATTGAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCAACCCTGAGATCATTGATGCTGCTGTGATACCCTATCCAGATGAAGAAGCAGGAGAGATTCCCACGGCTTATGTTGTTAGAAAGCCTGGAAGCAATATCAGTGAGGCCCAAGTCATTGATTTCATTGCAAAACAGGCATGCTTCTCCAACCTCAAGAAAACTAGAAATGGACATTGCACATTAGAGACCTGCCAACCATCATGGCTTGTCTGCTATTTTCGATGTTTCCTTAATTCAAATCAGACCATCTTCATCTTGCAGGTCGCACCGTACAAGAAAATTCGCCGAGTTTCTTTTATCAACGCCATCCCAAAATCACCTTCAGGGAAGATTCTGAGGAGGGAACTTGTCAAACATGCTCTCTCTCACGGTTCCAATAAGTTGTAA 1725 47.54 MADRKPNFNTGHFIDPRSGFCPETKIFHSLRPPLSRPPISQPLSITQHALPLLQSSAPPANATVLVDSNSVVHLSYAIFLRQIRILAANLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVVISPANPTGSDSEIAHQVQLCKPVIAFATSSTASKLPRELGKILIDSPEFFSMMSESNRLDGIDYGAANVKINQSDAAAILYSSGTTGRVKGVLLTHRNFVAANSGVHGLQLTANSEETERHPVFLCLLPLFHKYKVACISVTPPLVVALAKSELVAKYNLSSLRILGCGGAPLGKEVVEKFHYKFPNVEILQGYGLTESTVVARTLGCEESKNTSSVGRLAEGVEAKIVDPASGEALPPGQKGELWLGGPAIMKGLPYCSNVCQASSYLKLGITQYAKTHTGDLCYIDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPTAYVVRKPGSNISEAQVIDFIAKQACFSNLKKTRNGHCTLETCQPSWLVCYFRCFLNSNQTIFILQVAPYKKIRRVSFINAIPKSPSGKILRRELVKHALSHGSNKL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44438759 44441269 + Maker00036936 Lcy5g2140 633955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2140 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 258 562 - GO:0016405(PANTHER)
Lcy5g2140 574 Pfam AMP-binding enzyme C-terminal domain 439 491 IPR025110 -
Lcy5g2140 574 Gene3D - 74 261 - -
Lcy5g2140 574 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Lcy5g2140 574 Gene3D - 262 425 IPR042099 -
Lcy5g2140 574 Gene3D - 76 220 - -
Lcy5g2140 574 Pfam AMP-binding enzyme 59 262 IPR000873 -
Lcy5g2140 574 Gene3D - 426 568 IPR045851 -
Lcy5g2140 574 SUPERFAMILY Acetyl-CoA synthetase-like 58 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2140 Lcy-Chr5:44438759 Lcy7g0614 Lcy-Chr7:5582729 1.46E-92 dispersed
Lcy5g2139 Lcy-Chr5:44428060 Lcy5g2140 Lcy-Chr5:44438759 3.78E-253 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2140 K01904 - csv:101213796 701.434