Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2168 | ATGTTTAGTTTAATCACACCATTAATCCCTCCCTCTTTCCCCTTAATCTCTTTATATACTCCTTCTTCTTCCTCTGTTTCTTCTCACCTCTCTCACTTCTTCAGTTTCCACTCACCAATGGCGCCGCCCTCACTCCCTCTCGCTCTCCTCCTCTCCCTCTTCCTCCTCTCCTCCCTCTCCACCGCCCTCTCCGCCGCCCCCGCCGCCGTGCAAAACCCGGAGCTCGTCGTACAGGAAGTACACAGGAGCATAATCAACGCGACGAAGAGGAGGAATTTGGGATATCTCTCATGCGGGACTGGGAATCCAATCGACGATTGCTGGAGGTGCGATCCCAATTGGGAGAAGAATCGGCAGAGACTCGCCGACTGTGGAATTGGGTTCGGCAAAAACGCCATTGGCGGCCGTGACGGACAAATCTACGTCGTCACCGACTCCGGCGACGACGATCCCGTCAACCCAAAACCGGGAACTCTCCGGTACGCAGTGATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAGCTGATCATGAACTCCTTCAAGACCATCGACGGCCGTGGCGCCAGTGTCCACATCGCCGGCGGACCCTGCATTACGATTCAGTACGTGACGAACATCATAATTCATGGACTGAACATTCACGACTGCAAGCAAGGAGGGAACACAGACGTGAGAGATTCCCCTCGGCATTTCGGGTTCAGAACGTTGTCGGACGGCGACGGCGTCTCGATCTTCGGCGGAAGCCATGTCTGGGTGGATCACTGCTCTTTGTCGAACTGTAACGATGGGTTGATCGACGCCATTCACGGGTCGACAGCGATCACGATTTCGAACAATTACATGACGCATCATGACAAAGTGATGCTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAACCACTTTGGCGAAGGCCTCGTCCAAAGAATGCCCAGATGCCGGCATGGGTATTTTCATGTGGTGAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCCCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCGCCAGAGAGTGAGTGGAAGAATTGGAATTGGAGGTCAGAAGGAGATTTGATGCTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGGAGCGTCGTCGAGCTACGCCAGAGCGTCGAGCTTAGGGGCACGGCCGTCGTCGCTCGTCGGAACGATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA | 1353 | 53.44 | MFSLITPLIPPSFPLISLYTPSSSSVSSHLSHFFSFHSPMAPPSLPLALLLSLFLLSSLSTALSAAPAAVQNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTLSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44640219 | 44642165 | + | Maker00036730 | Lcy5g2168 | 633983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2168 | 450 | Gene3D | - | 101 | 443 | IPR012334 | - | |
Lcy5g2168 | 450 | SUPERFAMILY | Pectin lyase-like | 76 | 445 | IPR011050 | - | |
Lcy5g2168 | 450 | PANTHER | PECTATE LYASE 18-RELATED | 62 | 447 | IPR045032 | GO:0030570(InterPro) | |
Lcy5g2168 | 450 | Pfam | Pectate lyase | 187 | 367 | IPR002022 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 328 | 347 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 184 | 200 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 248 | 269 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 392 | 416 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 124 | 141 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 350 | 369 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 148 | 173 | IPR018082 | - | |
Lcy5g2168 | 450 | PRINTS | Pollen allergen Amb family signature | 421 | 444 | IPR018082 | - | |
Lcy5g2168 | 450 | SMART | amb_all | 176 | 373 | IPR002022 | - | |
Lcy5g2168 | 450 | FunFam | Pectate lyase | 101 | 443 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1725 | Lcy-Chr10:41619642 | Lcy5g2168 | Lcy-Chr5:44640219 | 2.75E-181 | dispersed | |
Lcy12g2053 | Lcy-Chr12:41846793 | Lcy5g2168 | Lcy-Chr5:44640219 | 4.69E-212 | dispersed | |
Lcy13g1730 | Lcy-Chr13:36269656 | Lcy5g2168 | Lcy-Chr5:44640219 | 1.29E-234 | dispersed | |
Lcy1g0461 | Lcy-Chr1:4038334 | Lcy5g2168 | Lcy-Chr5:44640219 | 6.14E-157 | dispersed | |
Lcy5g2043 | Lcy-Chr5:43440215 | Lcy5g2168 | Lcy-Chr5:44640219 | 1.13E-144 | dispersed | |
Lcy5g2168 | Lcy-Chr5:44640219 | Lcy7g0622 | Lcy-Chr7:5671541 | 1.32E-183 | dispersed | |
Lcy5g2168 | Lcy-Chr5:44640219 | Lcy11g1745 | Lcy-Chr11:41250075 | 6.69E-213 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2168 | K01728 | - | csv:101209736 | 778.089 |