Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2168 ATGTTTAGTTTAATCACACCATTAATCCCTCCCTCTTTCCCCTTAATCTCTTTATATACTCCTTCTTCTTCCTCTGTTTCTTCTCACCTCTCTCACTTCTTCAGTTTCCACTCACCAATGGCGCCGCCCTCACTCCCTCTCGCTCTCCTCCTCTCCCTCTTCCTCCTCTCCTCCCTCTCCACCGCCCTCTCCGCCGCCCCCGCCGCCGTGCAAAACCCGGAGCTCGTCGTACAGGAAGTACACAGGAGCATAATCAACGCGACGAAGAGGAGGAATTTGGGATATCTCTCATGCGGGACTGGGAATCCAATCGACGATTGCTGGAGGTGCGATCCCAATTGGGAGAAGAATCGGCAGAGACTCGCCGACTGTGGAATTGGGTTCGGCAAAAACGCCATTGGCGGCCGTGACGGACAAATCTACGTCGTCACCGACTCCGGCGACGACGATCCCGTCAACCCAAAACCGGGAACTCTCCGGTACGCAGTGATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAGCTGATCATGAACTCCTTCAAGACCATCGACGGCCGTGGCGCCAGTGTCCACATCGCCGGCGGACCCTGCATTACGATTCAGTACGTGACGAACATCATAATTCATGGACTGAACATTCACGACTGCAAGCAAGGAGGGAACACAGACGTGAGAGATTCCCCTCGGCATTTCGGGTTCAGAACGTTGTCGGACGGCGACGGCGTCTCGATCTTCGGCGGAAGCCATGTCTGGGTGGATCACTGCTCTTTGTCGAACTGTAACGATGGGTTGATCGACGCCATTCACGGGTCGACAGCGATCACGATTTCGAACAATTACATGACGCATCATGACAAAGTGATGCTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAACCACTTTGGCGAAGGCCTCGTCCAAAGAATGCCCAGATGCCGGCATGGGTATTTTCATGTGGTGAACAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCCCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCGCCAGAGAGTGAGTGGAAGAATTGGAATTGGAGGTCAGAAGGAGATTTGATGCTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGGAGCGTCGTCGAGCTACGCCAGAGCGTCGAGCTTAGGGGCACGGCCGTCGTCGCTCGTCGGAACGATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1353 53.44 MFSLITPLIPPSFPLISLYTPSSSSVSSHLSHFFSFHSPMAPPSLPLALLLSLFLLSSLSTALSAAPAAVQNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTLSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44640219 44642165 + Maker00036730 Lcy5g2168 633983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2168 450 Gene3D - 101 443 IPR012334 -
Lcy5g2168 450 SUPERFAMILY Pectin lyase-like 76 445 IPR011050 -
Lcy5g2168 450 PANTHER PECTATE LYASE 18-RELATED 62 447 IPR045032 GO:0030570(InterPro)
Lcy5g2168 450 Pfam Pectate lyase 187 367 IPR002022 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Lcy5g2168 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Lcy5g2168 450 SMART amb_all 176 373 IPR002022 -
Lcy5g2168 450 FunFam Pectate lyase 101 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1725 Lcy-Chr10:41619642 Lcy5g2168 Lcy-Chr5:44640219 2.75E-181 dispersed
Lcy12g2053 Lcy-Chr12:41846793 Lcy5g2168 Lcy-Chr5:44640219 4.69E-212 dispersed
Lcy13g1730 Lcy-Chr13:36269656 Lcy5g2168 Lcy-Chr5:44640219 1.29E-234 dispersed
Lcy1g0461 Lcy-Chr1:4038334 Lcy5g2168 Lcy-Chr5:44640219 6.14E-157 dispersed
Lcy5g2043 Lcy-Chr5:43440215 Lcy5g2168 Lcy-Chr5:44640219 1.13E-144 dispersed
Lcy5g2168 Lcy-Chr5:44640219 Lcy7g0622 Lcy-Chr7:5671541 1.32E-183 dispersed
Lcy5g2168 Lcy-Chr5:44640219 Lcy11g1745 Lcy-Chr11:41250075 6.69E-213 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2168 K01728 - csv:101209736 778.089