Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2185 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAATTCGTGGAGATTGATCCTACTGGTCGATATGGACGGGAATTAAAATCTTTGTATCTGCCTTCGTTTGGGATGATATTTTGTGCCAAATTGTGTGTTCTTGATCAAGATGTGGTATTTAGATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTAACAGATCTATTGCGGAACTCTGAAGATTTGGAGCGGCTCTATTCAGAAGTTCATTTGCTAAAAACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAACATCAACTTCATTACCGAGATATTCACTTCAGGGACACTACGGCAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCACTGAAAAAATGGTCAAGGCAGATACTAGAGGGCCTTCTGTATCTTCATAGCCATGACCCTCCAGTCATACATAGAGATTTGAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATTGGTGACCTAGGACTCGCGGCCATTCTTCAGCAAGCTCGTTCAGCTCACAGTGTCATTGGGACACCAGAGTTTATGGCTCCAGAGCTGTATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTGACTTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATATATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAAGTTACCGACGGAGGAGTTAGAGCATTTATAGAAAAATGCATTGCAAATGTTTCCGATCGCTTGCCTGCAAAAGATCTTTTAAGGGATCCATTTCTCCAAGCAGACGATGATCATGAAAGTCTAGCTCGTCATTTACAACCCAAGATACATCATACAGAAAAAGAGCATACTGATATTGATAGAAGTGTAGAGGATACTTCTGCTGAAACTAGCAGAGACTACAGTATGCATGGTCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGACTCAATGGGTAATTTCCGCAATATCCATTTTCCGTTTGATATTGAAACCGACACAGCAATTTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGACCTTTCAGATCAAGATGTCTCCACGATTTCTGAAATGATTGAAACAGAAATTCGGTCTTATATTCCAGATTGGACATCGGTTGACTATTCTGCAGATAATGTAGATAATGCAAGAGCAGATGTTGCAGTTTCAGATAGCTCTGCGTCTGAAACAAGGAATGCTGCCTCTCCCTTGTCTATGGAATCTAACAACCTTGCATTAGAGGTAATGCCTTCAGGGCGCAAGTATTGGTCTGATTCTCCAAAGGGAATGGGTGGGTGCTCTCCTATTAAGCCAGGACCTTCAAATTTGTCTTTTATCTCGGATCATAATGTTGAATCTTCAAGCAGCGATTTGCATGGGGATAATCTAGATCATGATGCTATAATCAAGGGACTAGAAAGTGAGCTCTTGTCTGAGGATGCTGCTAATGATGGGCAGGATCTTCATGCTAGTTTTGGGACACATCCTTTAGAGGAGAACAGTGAAGTTTCAAAACATGATAGACCCGTTGATGTTGAGATAATGACTGAAAAACTTGAAAATTTGTTGACACAACAGCAAAAGGAATTAGATGAACTAAAGAAGAAACATAAATCAGCTATTTCAGAACTTCTTACTGAAGTTACACCTGAGTCCTACCAGAAGGTTATAGGAATGTGTAAGCTAAAGCATTCTGATCTTGATCTGGTTCCCTAA 1860 39.78 MSQDLSLDQDLDESDPEFVEIDPTGRYGRELKSLYLPSFGMIFCAKLCVLDQDVVFRYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSDRLPAKDLLRDPFLQADDDHESLARHLQPKIHHTEKEHTDIDRSVEDTSAETSRDYSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIETDTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTSVDYSADNVDNARADVAVSDSSASETRNAASPLSMESNNLALEVMPSGRKYWSDSPKGMGGCSPIKPGPSNLSFISDHNVESSSSDLHGDNLDHDAIIKGLESELLSEDAANDGQDLHASFGTHPLEENSEVSKHDRPVDVEIMTEKLENLLTQQQKELDELKKKHKSAISELLTEVTPESYQKVIGMCKLKHSDLDLVP 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44959053 44963455 + Maker00036555 Lcy5g2185 634000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2185 619 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 589 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy5g2185 619 FunFam probable serine/threonine-protein kinase WNK9 126 306 - -
Lcy5g2185 619 ProSiteProfiles Protein kinase domain profile. 28 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2185 619 Gene3D Transferase(Phosphotransferase) domain 1 126 308 - -
Lcy5g2185 619 MobiDBLite consensus disorder prediction 316 344 - -
Lcy5g2185 619 Gene3D Phosphorylase Kinase; domain 1 12 124 - -
Lcy5g2185 619 Gene3D - 353 434 - -
Lcy5g2185 619 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 411 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lcy5g2185 619 SMART serkin_6 58 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2185 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2185 619 SUPERFAMILY Protein kinase-like (PK-like) 58 346 IPR011009 -
Lcy5g2185 619 Pfam Protein kinase domain 59 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2185 619 CDD STKc_WNK 58 301 - -
Lcy5g2185 619 FunFam Probable serine/threonine-protein kinase WNK1 12 124 - -
Lcy5g2185 619 Coils Coil 560 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2185 Lcy-Chr5:44959053 Lcy8g1692 Lcy-Chr8:43517851 1.67E-142 dispersed
Lcy5g2185 Lcy-Chr5:44959053 Lcy4g1952 Lcy-Chr4:45859161 7.71E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65977 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2185 K08867 - csv:101206177 972.23