Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2196 ATGGCATCATCATCATCAACAACAACAACAAGCCAAGCCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAGTGCTTACCAGGATGTGTTTTTGCACCATATTTCCCACCAGAGGAACCCCAAAAGTTCGCCAATGTCCACAAGGTTTTTGGAGCCAGCAACGTGGCCAAGCTTCTCAACGAAGTGCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTCGCCTATGAAGCCGAGGCCAGAATCAGAAACCCTGTTTATGGCTGCGTTGGTGCAATTTCCTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAACTCGACGCCACTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTTTCAACTCCCTTTTCATCTCAGCCTCAGATTCTCAGTCCTTGGAATCATAATGATGTTGTTTCTGCAAATTCTTCTTCTGTGTATTTCAGTACTGATTTTGAAGGAAGGTTCATGTGA 495 45.25 MASSSSTTTTSQAHYYSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRNPVYGCVGAISFLQKQVQRLQKELDATKARLFLYSCTDFSTPFSSQPQILSPWNHNDVVSANSSSVYFSTDFEGRFM 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45039484 45039978 + Maker00036700 Lcy5g2196 634011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2196 164 Coils Coil 97 117 - -
Lcy5g2196 164 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Lcy5g2196 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 123 - -
Lcy5g2196 164 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2196 Lcy-Chr5:45039484 Lcy8g0396 Lcy-Chr8:12210198 5.22E-48 dispersed
Lcy10g1903 Lcy-Chr10:43176159 Lcy5g2196 Lcy-Chr5:45039484 2.97E-58 wgd
Lcy10g0181 Lcy-Chr10:2497599 Lcy5g2196 Lcy-Chr5:45039484 3.58E-63 wgd
Lcy2g0127 Lcy-Chr2:981291 Lcy5g2196 Lcy-Chr5:45039484 1.29E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20160 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2196 - - - 0.0