Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2196 | ATGGCATCATCATCATCAACAACAACAACAAGCCAAGCCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAGTGCTTACCAGGATGTGTTTTTGCACCATATTTCCCACCAGAGGAACCCCAAAAGTTCGCCAATGTCCACAAGGTTTTTGGAGCCAGCAACGTGGCCAAGCTTCTCAACGAAGTGCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTCGCCTATGAAGCCGAGGCCAGAATCAGAAACCCTGTTTATGGCTGCGTTGGTGCAATTTCCTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAACTCGACGCCACTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTTTCAACTCCCTTTTCATCTCAGCCTCAGATTCTCAGTCCTTGGAATCATAATGATGTTGTTTCTGCAAATTCTTCTTCTGTGTATTTCAGTACTGATTTTGAAGGAAGGTTCATGTGA | 495 | 45.25 | MASSSSTTTTSQAHYYSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIRNPVYGCVGAISFLQKQVQRLQKELDATKARLFLYSCTDFSTPFSSQPQILSPWNHNDVVSANSSSVYFSTDFEGRFM | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45039484 | 45039978 | + | Maker00036700 | Lcy5g2196 | 634011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2196 | 164 | Coils | Coil | 97 | 117 | - | - | |
Lcy5g2196 | 164 | ProSiteProfiles | LOB domain profile. | 17 | 118 | IPR004883 | - | |
Lcy5g2196 | 164 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 123 | - | - | |
Lcy5g2196 | 164 | Pfam | Lateral organ boundaries (LOB) domain | 18 | 115 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2196 | Lcy-Chr5:45039484 | Lcy8g0396 | Lcy-Chr8:12210198 | 5.22E-48 | dispersed | |
Lcy10g1903 | Lcy-Chr10:43176159 | Lcy5g2196 | Lcy-Chr5:45039484 | 2.97E-58 | wgd | |
Lcy10g0181 | Lcy-Chr10:2497599 | Lcy5g2196 | Lcy-Chr5:45039484 | 3.58E-63 | wgd | |
Lcy2g0127 | Lcy-Chr2:981291 | Lcy5g2196 | Lcy-Chr5:45039484 | 1.29E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20160 | None | None | None | None | Lcy | TF |
Pathway information
