Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2217 ATGCAGAGCTCTGCGGTTACTTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGGCGGCCGTCCACTTCGTCCTTCAGCTCTGGATGTAACTCAATTCGGTTGTCTTCTTCGCCTTCCTCGAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTGCCTTCCTCTTGGCCCCGGCGATCTTGGACTCTATCGTCGTCTCCTTTTTCGTCCTCCAAACTCCGGCCATGGACCGGTGTGCCCTTGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCCACTGCGGTGCCTGATAGCTCGGGGGAGTCGACCAGTGCTGGCGGTAACCTGATGAAAACGTTGGAGCTCGGGTCGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTTTCCGTTCCCTGTAACTGTCACTGGAGTTCAATTTGCTGTAGGCACTGTACTTGTTCTTCTTATGTGGGGACTTAATCTCTACAAAAAGCCAAAGATTAGTGGTGCTCAGCTTGCAGCTATTCTGCCGTTGGCATTTGTTCACACATTGGGAAATCTTTTTACAAATATGAGTCTTGGGAAAGTGGCGGTATCATTCACTCACACAATCAAAGCTTCGGAGCCATTTTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGGATTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTATTATCCCCTGTGGCTATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACGTGAAACAAGTATACCTTAGGTCTCTTCTTGCCGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCAGTAGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCGATCAATTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACGGCTTAA 1089 46.92 MQSSAVTFSPSLPLLKPRRPSTSSFSSGCNSIRLSSSPSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPLLASDSDASHFKVQATAVPDSSGESTSAGGNLMKTLELGSLFGLWYLFNIYFNIYNKQVLKVFPFPVTVTGVQFAVGTVLVLLMWGLNLYKKPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKASEPFFSVILSAMFLGEDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNVKQVYLRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45175789 45180185 + Maker00036380 Lcy5g2217 634032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2217 362 MobiDBLite consensus disorder prediction 1 45 - -
Lcy5g2217 362 PANTHER SOLUTE CARRIER FAMILY 35 116 232 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Lcy5g2217 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 274 353 - -
Lcy5g2217 362 Pfam Triose-phosphate Transporter family 118 232 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2217 Lcy-Chr5:45175789 Lcy9g1211 Lcy-Chr9:36492485 3.57E-46 dispersed
Lcy10g1913 Lcy-Chr10:43243382 Lcy5g2217 Lcy-Chr5:45175789 2.85E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2217 K15283 - csv:101203848 541.191