Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2218 ATTTCTCTCTTACTTGCGTTGATCGTTGTTCTGTGTTCATCTGAATCCTTCTATCCTTCGTATTTCTTGTGTTTCTGCTGTTTCAGTTCTGTTCTGAAGCCGTGTGTGTGTTTTCAATCATGGGTTCTCGCTAATCTTGCTGTTCCTGGTCGGTGGGACTGTTCTGTCAATGCCCATTTGCTTTCACTTGGTCTGAAACGCTCAGAATGCAGTTTGGGAATATGGAAAAGGGGAAAAAAATCCGTTCACAAAGCTTCTTGTTCACAAAATATTCCACTCAACATGGAAGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATAAGAGGAAGACTTCTATGCTACAAACAGGATTGGACTGGCGGACTTCGCTCTGGTATCAGGATCTTGGCCCCAACAACCTACATATTCTTTGCTTCGGCGATTCCAGTTATATCGTTCGGGGAGCAGCTAGAAAGGAATACATACGGGACTCTAACTGCCGTACAAACTCTAGCATCAACGGCAGTTTGTGGCATCATTCACTCAATCTTTGGGGGACAGCCTCTGCTCATCCTTGGGGTCGCTGAACCAACTGTTTTGATGTATACATTTATGTTTGACTTTGCCAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACGGGATGGGTATGTGTATGGACAGCCATTTTGCTTTTCTTGCTGGCTGTATTGGGTGCATGCTCCCTGATCAATAGGTTTACACGTCTTGCTGGAGAACTGTTTGGTCTGCTAATTGCTATGCTCTTTATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTCGGTGTACCCCAGAGGGAAAATCCTAATCAGGTGGGGCTACAAGCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGCTGTCCTTCGGGCTTCTACTAACTGCACTCAAAAGCCGCAAGGCTAGATCATGGCGCTATGGAACTGGTTGCCTACGGGGCTTTATAGCGGATTATGGAGTTCCACTTATGGTACTCGTATGGACAGCCTTATCATACATTCCAGTTAACAATGTCCCGCATGGGATTCCAAGGAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCTTACTCAAATTGGACGGTTATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACTATGATAGCAGTTCTTTACTACTTTGACCACAGTGTTGCATCTCAACTTGCCCAACAGAAGGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTTCTCCTAGGTTTCCTTGTTATACTGTGCGGACTTATAGGGATTCCACCTTCCAATGGTGTAATTCCTCAATCTCCGATGCACACAAAAAGCTTAGCTACCCTAAAACATCAGCTTTTGCGGAACAAGCTGGTAGCAGCGGCACGTCAAAGTTTCCGGAAAAAATCAAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATAATGAGATGCAGACTCCTTTAATTTACCAAAATCCACCAGCTGCGGGGCTGAAGGAGTTGAAAGATTCCACGATCCAACTAGCTTCAAGAACTGGCTACATCGATGCACCTGTTGATGAAACTATTTTCGATGTGGATAAAGATGTTGATGATCTTCTGCCAGTGGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAATAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTCCTAAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTTGCTTTCATGGCAATCGAGAGCTTGCCCGGAAATCAGTTCTGGGAAAGGATTTTACTGCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTCCTAGAAACTGTCCCCTTCAAAACAATTGCTACCTTCACCTTGTTTCAGACAGTATATCTGCTGATGTGTTTTGGTTTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTTGTCCCCGTGCGGCAGTATCTGCTCCCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATATGAGGAAGCCCCTGCAATTGCTTATAATCCGTCATTCGAAGATCGAATGGGAAGAACTCCCAACATTGACGACGGTGAAATACTTGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGACTTACGCAGAGTTCGAAAGTGACAAGCTCAACCCCAACTTCCCTGGAGGGCATCAAACCTACCTACAGCCCACAGATACCACAGAAACTGTACAGTCCACGGATCAATGAGCTGAGAAGAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTTGACTTTAAGCTAAGTCCAAGTCCTAGCTCAGAACCAGGGCCAGGACCAGCACCAGGACCATCCTTTAGAAATTAG 2442 45.13 ISLLLALIVVLCSSESFYPSYFLCFCCFSSVLKPCVCFQSWVLANLAVPGRWDCSVNAHLLSLGLKRSECSLGIWKRGKKSVHKASCSQNIPLNMEETFFPFRGIKNDIRGRLLCYKQDWTGGLRSGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTAVCGIIHSIFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGVPQRENPNQVGLQAPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGFIADYGVPLMVLVWTALSYIPVNNVPHGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVAAARQSFRKKSNLSQLYRNMQEAYNEMQTPLIYQNPPAAGLKELKDSTIQLASRTGYIDAPVDETIFDVDKDVDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPRFFKGAHLQDLDAAEYEEAPAIAYNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRLTQSSKVTSSTPTSLEGIKPTYSPQIPQKLYSPRINELRRERSSLSPGKGLDFKLSPSPSSEPGPGPAPGPSFRN 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45181678 45188405 - Maker00036771 Lcy5g2218 634033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2218 813 PANTHER ANION EXCHANGE PROTEIN 85 732 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Lcy5g2218 813 FunFam probable boron transporter 2 112 154 - -
Lcy5g2218 813 MobiDBLite consensus disorder prediction 739 813 - -
Lcy5g2218 813 Pfam HCO3- transporter integral membrane domain 296 466 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy5g2218 813 Pfam HCO3- transporter integral membrane domain 554 696 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy5g2218 813 Pfam HCO3- transporter integral membrane domain 101 274 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy5g2218 813 MobiDBLite consensus disorder prediction 798 813 - -
Lcy5g2218 813 Gene3D Helical hairpin bin 112 154 - -
Lcy5g2218 813 MobiDBLite consensus disorder prediction 739 768 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0381 Lcy-Chr12:4628462 Lcy5g2218 Lcy-Chr5:45181678 0 dispersed
Lcy13g1757 Lcy-Chr13:36506590 Lcy5g2218 Lcy-Chr5:45181678 2.12E-261 dispersed
Lcy5g2218 Lcy-Chr5:45181678 Lcy12g0614 Lcy-Chr12:7500742 3.13E-274 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2218 K24194 - csv:101203606 1335.86