Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2226 ATGAGGAATTTGAACTGGTTCAAGCCAATTTCGATCAATGGGAAGCCTGGGAGGAGGCTTTCTCTTGGAGAGTACGAGCGGGCTGTGTCGTGGTCGAAGTATTTGGTGTCGTCAGGGGCGGAGATAAAGGGAGAAGGTGAAGAAGAATGGAGTGCAGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGCAGGATTTACAGAGGCGTGTATAAGCAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAACTTGGCTAATTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGACTGAGACATCCCAATATCATCACTTGCCTTTTTATGGCAGCATGCAATGCTTTTAGCATCTTATCACGGGAAGAGCAGAGAAAAATGGCTTCTGTATTCCCTGGAAATGATCAAGATAATCTCTTCTTTTACCATGGGGAACCTCTACTACATAATTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATCATCACGGAGTACATGGCAGGGGGTTCATTAAGAAAATATCTCCATCAGCAGGAGCCACATTCCGTTCCGCTGAACTTAGTTCTGAAACTAGCCCTCGACATCTCACGCGGGATGCAGTACCTTCACTCTCAGGGAATACTTCACAGGGATCTCAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCGTGCATAGAATCTCAGTGCGGAAGCGCAAAGGGATTCACCGGAACTTATCGCTGGATGGCGCCTGAAATGATCAAAGAAAAACATCACACCAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTGACTGCATTGACACCATTTGATAACATGACTCCTGAACAAGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGGCCTCCTCTACCTTCGGCGTGCCCAGTGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAAAAATCCCGACAAGCGACCGCATTTCGACGAGATCGTTTCAATTTTGGAAACATACATGGAGTCTTACAATGAAGATCCAGAATTTTTCTGTCACTACGTGCCCTCATCTAGATATACTGCTTTACAATGCTTACCAAAATGTATTACTGAACAATTGTCTGCTTCATTGAAGCCTAGGAATTCATCATCTTGA 1212 44.31 MRNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITCLFMAACNAFSILSREEQRKMASVFPGNDQDNLFFYHGEPLLHNFIAACKKPPVFCIITEYMAGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCIESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPVAFRHLIKRCWSKNPDKRPHFDEIVSILETYMESYNEDPEFFCHYVPSSRYTALQCLPKCITEQLSASLKPRNSSS 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45283082 45286268 - Maker00036439 Lcy5g2226 634041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2226 403 SUPERFAMILY Protein kinase-like (PK-like) 48 371 IPR011009 -
Lcy5g2226 403 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 PRINTS Tyrosine kinase catalytic domain signature 263 273 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 PRINTS Tyrosine kinase catalytic domain signature 326 348 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 ProSiteProfiles Protein kinase domain profile. 57 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 PANTHER SERINE-THREONINE PROTEIN KINASE 55 359 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy5g2226 403 Gene3D Transferase(Phosphotransferase) domain 1 158 372 - -
Lcy5g2226 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 CDD STKc_MAP3K-like 66 355 - -
Lcy5g2226 403 Pfam Protein tyrosine and serine/threonine kinase 162 355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 SMART serkin_6 57 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2226 403 Gene3D Phosphorylase Kinase; domain 1 44 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0478 Lcy-Chr1:4194078 Lcy5g2226 Lcy-Chr5:45283082 2.20E-126 dispersed
Lcy5g1875 Lcy-Chr5:41596723 Lcy5g2226 Lcy-Chr5:45283082 4.67E-102 dispersed
Lcy5g2226 Lcy-Chr5:45283082 Lcy8g1568 Lcy-Chr8:42310050 2.60E-43 dispersed
Lcy6g1864 Lcy-Chr6:38878132 Lcy5g2226 Lcy-Chr5:45283082 9.05E-21 dispersed
Lcy11g1588 Lcy-Chr11:39677117 Lcy5g2226 Lcy-Chr5:45283082 2.58E-11 transposed
Lcy9g1947 Lcy-Chr9:44467088 Lcy5g2226 Lcy-Chr5:45283082 1.45E-29 transposed
Lcy10g0222 Lcy-Chr10:3512089 Lcy5g2226 Lcy-Chr5:45283082 5.78E-63 wgd
Lcy2g0145 Lcy-Chr2:1143771 Lcy5g2226 Lcy-Chr5:45283082 2.07E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65979 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2226 - - - 0.0