Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2227 ATGGCAGTCATTACGCTTTACAGTTGCTTTCATTTGATCTCTTCGTTTTCTTTAACTGTTTTGTTTGGTAGAATAATTGTGACCATCAACTGGAGGCGGTATAATACGTGTACATATCCGTTGCACATATGGATCGTGGTTGATTATACCTGTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGACAATGCACTTTCAGCTGGAATGGGATTGGACTTTGGATGGCAGCAGCGATATGCTCGGTTTTGCGGAAGAGTTGTGGTTCTTTCTATTCTCTCTATATTGCTCTACCCATTTTTATGTGCATGGACTGTAGTTGGTACCCTGTGGTTTAGAGGTGCTAAAGACTGTTTACCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTGGGAAAGTGGTTAGCGCGTCGACAAGCACACTTGTTACGAGCCCAACAAGGCATACCTGTATCCGAATATGGGGTACTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACGCGAGGCATTGGCCAAGATGCTACCGGGTACCATCCCGGGCTTTTCTTGACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATTCAGGAACTTCCAAAGTTCAGGCTGAAGGCGGTCCCAACCGATTGCAGCGAATGCCCGATTTGCCTCGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCTCACAACTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTCAAATGTCCTCGATGCCGCTCCTCGGTCTTCCCAAACCTCGACCTCAGTGCTCTTTCTAGCCTGCGTTCGGACACAGAACAAACATCTGCCAATGGTTTCCTAACAAGCCAACCTTCAAGTCTGTTGAGATCCAGTCCAATCCCCATCGCTCGTACCGTAAACACCACAGCCCTCGATACCGACACTGCCTTCGATGCAATGGAGAACGGAAGCTCACCCGTGCCATCTGCTTCTCGACATTGA 1056 48.39 MAVITLYSCFHLISSFSLTVLFGRIIVTINWRRYNTCTYPLHIWIVVDYTCVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSILLYPFLCAWTVVGTLWFRGAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSSLRSDTEQTSANGFLTSQPSSLLRSSPIPIARTVNTTALDTDTAFDAMENGSSPVPSASRH 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45290794 45294847 - Maker00036378 Lcy5g2227 634042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2227 351 FunFam E3 ubiquitin-protein ligase SIS3 204 282 - -
Lcy5g2227 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 282 IPR013083 -
Lcy5g2227 351 SMART ring_2 236 276 IPR001841 -
Lcy5g2227 351 ProSiteProfiles Zinc finger RING-type profile. 236 277 IPR001841 -
Lcy5g2227 351 Pfam Ring finger domain 235 277 IPR001841 -
Lcy5g2227 351 SUPERFAMILY RING/U-box 218 285 - -
Lcy5g2227 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 13 348 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0141 Lcy-Chr2:1117976 Lcy5g2227 Lcy-Chr5:45290794 1.56E-06 transposed
Lcy2g0651 Lcy-Chr2:5561838 Lcy5g2227 Lcy-Chr5:45290794 1.02E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2227 K16284 - csv:101222360 602.053