Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2246 ATGGTGGGAGGCCCATTCTATAACGTTCGATTGGGACGAAAAGATGGATTGATTTCAAAAGTAGAAAATGTGGAAGGGAACCTCCCAAGAGTGAACTTCACAATCGACACTCTCATCAAATACTTCAATGACAGAGGCTTTACCATCCAAGAAATGGTTGCCCTCTCTGGCGGCCACACCATCGGTTTCTCCCACTGTAAAGAGTTCGCTGATCGCCTCTTCAACTTCAGTGCTTCCACACCCACTGACCCCGACATTTATCCCAAATTTGCTGAAAAACTCAAGGCCATGTGCGCCAATCACTTGACCGACACTACTATGTCTGCATTCAACGACGTCATGACACCTGGAAAATTCGACAACATGTACTTCCAAAATCTCGCACGTGGCCTTGGCCTTTTGGCCACTGACAATTTCCTCGTTAAGGATCCCAGGACCAAGCCGTTTGTCGATATGTACGCCGTTAACCAGACAGCTTTTTTTAACGACTTTGCTCACGCTATGGAAAAGGTCAGCGTTTACGGCGTTAAGACAGGAAGGAAAGGGGAGGTTCGACGAAGATGGGAATTGTTATCAGTTGTGATGGTGTAG 591 46.87 MVGGPFYNVRLGRKDGLISKVENVEGNLPRVNFTIDTLIKYFNDRGFTIQEMVALSGGHTIGFSHCKEFADRLFNFSASTPTDPDIYPKFAEKLKAMCANHLTDTTMSAFNDVMTPGKFDNMYFQNLARGLGLLATDNFLVKDPRTKPFVDMYAVNQTAFFNDFAHAMEKVSVYGVKTGRKGEVRRRWELLSVVMV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45418386 45419375 + Maker00036906 Lcy5g2246 634061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2246 196 PANTHER - 1 188 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 ProSitePatterns Peroxidases proximal heme-ligand signature. 51 61 IPR019793 -
Lcy5g2246 196 FunFam Peroxidase 29 171 - -
Lcy5g2246 196 Pfam Peroxidase 2 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 Gene3D Peroxidase, domain 2 29 171 - -
Lcy5g2246 196 ProSiteProfiles Plant heme peroxidase family profile. 1 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 Gene3D - 2 187 - -
Lcy5g2246 196 PRINTS Haem peroxidase superfamily signature 3 15 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Haem peroxidase superfamily signature 51 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Haem peroxidase superfamily signature 112 127 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 SUPERFAMILY Heme-dependent peroxidases 2 189 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Plant peroxidase signature 3 18 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Plant peroxidase signature 110 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Plant peroxidase signature 126 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g2246 196 PRINTS Plant peroxidase signature 50 62 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2246 Lcy-Chr5:45418386 Lcy7g1962 Lcy-Chr7:46171679 3.61E-69 dispersed
Lcy10g1952 Lcy-Chr10:43564455 Lcy5g2246 Lcy-Chr5:45418386 1.61E-72 wgd
Lcy2g0627 Lcy-Chr2:5376375 Lcy5g2246 Lcy-Chr5:45418386 6.74E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2246 K00430 - csv:101220163 323.553