Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g2248 | ATGGTTGGCCATGGCAATCACAGGTTGAAATTCTCCATCTTCCACCACCGATCTTCATCAGATTCCAAACCAGAACGCCCAAAAGAGTATCCTGAAGAGTACCTTTGCGGAATTTCCAAGTCGTTAATGGCGGACCCAGTTGTCGTCTCCTCCGGCCAGACCTTCGAGCGGCTCTGCGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGGTTGAAGAAGACGGGTCCAGGGCGGATTTCTCCTCTGTTATTACCAACAGGAACATGAAATTCACCATTCTCAAATGGTGCGATAACAACGGAATCGAACACCCGCAACCGCCCGATTACAGCTCCATTGAGTTGATCGTTCGTCAGTTGATGGAGAAGGAGAGGCAAGAGAATCGATTCCTGGCTTCTGATAGCGAGTTGTTAAGGGGCGTCGCCGATAAGCCACCGGGAGTTGCGGTTCACGCGACGACGGAGGTCGGCCTGCGAGTCAACCGGTTTCAACTCAACTCGCCGCCGGAGATGGAGGAGGTCGTACGGGAAAGTACTCTTTTGCCCTTCAAAACGCAGCCCTCTTGTTATGCGGCTTCCTCTTCACATGGAAGCTTCGACGGAGAGCCCAATCACAGAGGAGATTCATATTCCCCGAATTCAGAAGAGGAATCTCAACTCATCTCGAAATTCAGAAGCGTTGAGGGATTCGAGCAACAAGAAGGTGTGATTTCCCTAAGAAAATTAACCAAATCCAACGAATCGATTAGGGTTTCGTTATGCACGAAGGAATTACTCGCCGCCCTACTCCCTCTGGTTTCATCCCGATCTACAAGCATCCAAATCAACGCCGTAGCTTCCGTCGTGAATCTCTCCCTGGAGAAATCGAACAAATTGAAGATCGTACGAGCCGGATTCATTTCGCCATTGATCGACGTGTTAGACGGCGGATCCACCGAATCGCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCCTTAGACGACGAGAACAAAATGGCGATTGGAATCCTCGGCGCGTTACCGGTGCTGATGAACACGCTCCGATCGGACAGCGAGAGGACGAGGAACGATGCGGCTCTTTGCTTATACCATTTGACTCTAAACCCTAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGTTCCAATCCTGCTGTCGTTGACGAGAATGGAAGGCTCGGCGAGTCGAATACTGTTGATTCTGTGCAACATCGCCGTCTGCGTGGACGGGAGATCGGCGATGCTGGACGCGAATGCGGTGGGTTGTTTGGTGGAGATACTGAAGGAGAAGGAGATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTCACGCACTGAGTCAGGGCGGATTCCGATTCAGAGGACTGGCGAAGGAGGCCGGAGCGGTGGAGGTTCTGAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGAGGGAGAAGGCGAAGAGGATTTTGCAGATGATGAGAACCGGCGGGAGCGGTTCGGTCGAGATGGAAGGCATCGGCCGACATGGGCTTGATACTGGCGGAGTCAGCTGGACCGGCCGAGTTGGTGCTGGCGTGAACCGGTACTCTACAAATACCACTAAGTTTTGA | 1608 | 52.74 | MVGHGNHRLKFSIFHHRSSSDSKPERPKEYPEEYLCGISKSLMADPVVVSSGQTFERLCVQVCQDLGFSPKVEEDGSRADFSSVITNRNMKFTILKWCDNNGIEHPQPPDYSSIELIVRQLMEKERQENRFLASDSELLRGVADKPPGVAVHATTEVGLRVNRFQLNSPPEMEEVVRESTLLPFKTQPSCYAASSSHGSFDGEPNHRGDSYSPNSEEESQLISKFRSVEGFEQQEGVISLRKLTKSNESIRVSLCTKELLAALLPLVSSRSTSIQINAVASVVNLSLEKSNKLKIVRAGFISPLIDVLDGGSTESQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSDSERTRNDAALCLYHLTLNPSNRVKLVKLGAVPILLSLTRMEGSASRILLILCNIAVCVDGRSAMLDANAVGCLVEILKEKEMDSESTRENCVVALHALSQGGFRFRGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEMEGIGRHGLDTGGVSWTGRVGAGVNRYSTNTTKF | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45425010 | 45426617 | - | Maker00036934 | Lcy5g2248 | 634063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g2248 | 535 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 106 | IPR013083 | - | |
| Lcy5g2248 | 535 | ProSiteProfiles | U-box domain profile. | 29 | 104 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy5g2248 | 535 | Pfam | U-box domain | 31 | 101 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy5g2248 | 535 | Pfam | Armadillo/beta-catenin-like repeat | 291 | 327 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | Pfam | Armadillo/beta-catenin-like repeat | 329 | 368 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | PANTHER | U BOX DOMAIN-CONTAINING | 18 | 494 | - | - | |
| Lcy5g2248 | 535 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 299 | 336 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | Gene3D | - | 397 | 496 | IPR011989 | - | |
| Lcy5g2248 | 535 | Gene3D | - | 218 | 396 | IPR011989 | - | |
| Lcy5g2248 | 535 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 340 | 382 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | SMART | Ubox_2 | 33 | 97 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy5g2248 | 535 | SUPERFAMILY | RING/U-box | 16 | 108 | - | - | |
| Lcy5g2248 | 535 | SUPERFAMILY | ARM repeat | 228 | 492 | IPR016024 | - | |
| Lcy5g2248 | 535 | MobiDBLite | consensus disorder prediction | 193 | 218 | - | - | |
| Lcy5g2248 | 535 | SMART | arm_5 | 288 | 328 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | SMART | arm_5 | 370 | 408 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | SMART | arm_5 | 409 | 452 | IPR000225 | GO:0005515(InterPro) | |
| Lcy5g2248 | 535 | SMART | arm_5 | 329 | 369 | IPR000225 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g2248 | Lcy-Chr5:45425010 | Lcy7g0059 | Lcy-Chr7:472227 | 1.58E-11 | dispersed | |
| Lcy10g1953 | Lcy-Chr10:43565586 | Lcy5g2248 | Lcy-Chr5:45425010 | 5.53E-95 | wgd |
Pathway information