Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2250 ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGATTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCATCTCTAAAAGCCGACAATAGGAGGGAGAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTACTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACACATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1143 43.92 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45467885 45471809 - Maker00036085 Lcy5g2250 634065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2250 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Lcy5g2250 380 MobiDBLite consensus disorder prediction 131 148 - -
Lcy5g2250 380 FunFam E2F transcription factor 8 18 90 - -
Lcy5g2250 380 PANTHER TRANSCRIPTION FACTOR E2F 9 353 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lcy5g2250 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Lcy5g2250 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 Gene3D - 18 91 IPR036388 -
Lcy5g2250 380 Gene3D - 149 236 IPR036388 -
Lcy5g2250 380 MobiDBLite consensus disorder prediction 115 151 - -
Lcy5g2250 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 FunFam E2F transcription factor-like E2FE 149 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2250 K09391 - - csv:101219210 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1215 Lcy-Chr1:11493559 Lcy5g2250 Lcy-Chr5:45467885 3.09E-10 dispersed
Lcy5g2250 Lcy-Chr5:45467885 Lcy8g2016 Lcy-Chr8:46386394 1.09E-09 dispersed
Lcy2g0622 Lcy-Chr2:5319930 Lcy5g2250 Lcy-Chr5:45467885 1.81E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2250 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 3.5e-107 386.0
Lcy8g2016 . 21 456 E2F-DP Transcription Factor Family AT2G36010 52.2 9.0e-110 394.8
Lcy8g2016 . 20 449 E2F-DP Transcription Factor Family AT5G22220 55.1 1.1e-104 377.9
Lcy8g2016 . 20 449 E2F-DP Transcription Factor Family AT5G22220 55.1 1.1e-104 377.9
Lcy8g2016 . 21 456 E2F-DP Transcription Factor Family AT2G36010 52.2 9.0e-110 394.8
Lcy5g2250 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 3.5e-107 386.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20162 None None None None Lcy TF