Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2250 ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGATTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCATCTCTAAAAGCCGACAATAGGAGGGAGAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTACTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACACATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1143 43.92 MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45467885 45471809 - Maker00036085 Lcy5g2250 634065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2250 380 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Lcy5g2250 380 MobiDBLite consensus disorder prediction 131 148 - -
Lcy5g2250 380 FunFam E2F transcription factor 8 18 90 - -
Lcy5g2250 380 PANTHER TRANSCRIPTION FACTOR E2F 9 353 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lcy5g2250 380 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Lcy5g2250 380 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 Gene3D - 18 91 IPR036388 -
Lcy5g2250 380 Gene3D - 149 236 IPR036388 -
Lcy5g2250 380 MobiDBLite consensus disorder prediction 115 151 - -
Lcy5g2250 380 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lcy5g2250 380 FunFam E2F transcription factor-like E2FE 149 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1215 Lcy-Chr1:11493559 Lcy5g2250 Lcy-Chr5:45467885 3.09E-10 dispersed
Lcy5g2250 Lcy-Chr5:45467885 Lcy8g2016 Lcy-Chr8:46386394 1.09E-09 dispersed
Lcy2g0622 Lcy-Chr2:5319930 Lcy5g2250 Lcy-Chr5:45467885 1.81E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20162 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2250 K09391 - csv:101219210 706.827