Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2250 | ATGGCGGCTCTGCCATCCTCTTCTGCGCTACCGGATTCTTCTTCCTCCAGGCACCATACTTACAGTAGGAAGCAGAAATCACTTGGTCTTTTGTGCTCCAATTTTTTGAGCTTGTATAACCACGATGGAGTTCACTCGATTGGGCTTGACGATGCCGCGTCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGTGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTATAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCATTACAAGATCTTAAGGAGGAGGGATTGAAGGAGAATTGCAGTGCATCTGATGTTAACGATTATGCAAAAGTCTCGGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGAACTCAACTGCCACCGTGCCCAAATCTTCATCATCTCTAAAAGCCGACAATAGGAGGGAGAAGTCATTGGCGCTTCTGACGCAAAATTTTGTTAAGTTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTACTGTCTTCCATGAATCTAATTGAAAAGACCCATACGACTGACACAAGAAAGCCTGCGTTTAGATGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCCTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGATGTAACAAATGTCAGTTATAAGAAGACTAAGGCTGAAAATTCAGCCTATCAGAGTTTAAATCACTGCCTCAGCATGCAAAAGCTAGTGCAGTGCGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCCAAAGTTGGTGTCTCAGACAATAACAATGCGAAGCGGACACATGACTGGGAAGGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA | 1143 | 43.92 | MAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDVNDYAKVSDDEDDDERFSNPTGSQNSTATVPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTLLPESRKRAFGTDVTNVSYKKTKAENSAYQSLNHCLSMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNAKRTHDWEGLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45467885 | 45471809 | - | Maker00036085 | Lcy5g2250 | 634065 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2250 | 380 | SUPERFAMILY | Winged helix DNA-binding domain | 156 | 235 | IPR036390 | - | |
Lcy5g2250 | 380 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Lcy5g2250 | 380 | FunFam | E2F transcription factor 8 | 18 | 90 | - | - | |
Lcy5g2250 | 380 | PANTHER | TRANSCRIPTION FACTOR E2F | 9 | 353 | IPR015633 | GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER) | |
Lcy5g2250 | 380 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - | |
Lcy5g2250 | 380 | SMART | E2F_TDP_2 | 154 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lcy5g2250 | 380 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lcy5g2250 | 380 | Gene3D | - | 18 | 91 | IPR036388 | - | |
Lcy5g2250 | 380 | Gene3D | - | 149 | 236 | IPR036388 | - | |
Lcy5g2250 | 380 | MobiDBLite | consensus disorder prediction | 115 | 151 | - | - | |
Lcy5g2250 | 380 | Pfam | E2F/DP family winged-helix DNA-binding domain | 155 | 234 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lcy5g2250 | 380 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lcy5g2250 | 380 | FunFam | E2F transcription factor-like E2FE | 149 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1215 | Lcy-Chr1:11493559 | Lcy5g2250 | Lcy-Chr5:45467885 | 3.09E-10 | dispersed | |
Lcy5g2250 | Lcy-Chr5:45467885 | Lcy8g2016 | Lcy-Chr8:46386394 | 1.09E-09 | dispersed | |
Lcy2g0622 | Lcy-Chr2:5319930 | Lcy5g2250 | Lcy-Chr5:45467885 | 1.81E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20162 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2250 | K09391 | - | csv:101219210 | 706.827 |