Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2280 ATGGCGGAAAAGCCAGAAGTGTTGGAGGCCGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAACGGCTGAAGATTTTTGGCCACAACAAGCTTGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGATTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCCGACTGGCAAGATTTTGTGGGTATCATTACCTTGCTTATCATCAACTCGACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGTCTGCGCTTACAGGTGAATCTCTCCCTGTCACGAAAGGTCCTGGTGATGGTGTGTACTCTGGTTCCACTTGTAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGCAAGAAGATTACTTGATTACTTGATTTTCTGTTCAGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTCTGCGTTCACTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGTGCAGAGACTATAAGGAGAGCTTTAAATCTTGGAGTAAATGTGAAAATGATTACCGGAGATCAACTGGCCATAGGAAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATTGAAAAAGCAGATGGTTTTGCCGGTGTATTCCCTGAGCATAAATACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGCAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCGATATTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCCCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTCAACGATGGTTCGTTCAAAATTCCTCTAGTTAATCTGCTGATTGTTGAAGGTACAATCATGACAATATCAAAGGATAGAGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATCTTTACTACTGGCATTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCGTATAAAACTAACTTTTTCCCTCGAGTCTTTGGGGTGCCAACCCTTGAAAAAACAGCTCATGATGACTTCCGGAAACTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGGAGTTGGTCCTACGTCGAGCGTCCTGGGTTGTTTCTTGTAGTGGCTTTTATACTTGCTCAACTGGTTGCCACTCTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTTTACAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAAGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCGTTCACAAGACAAAAGGATTTCGGAAAGGAACAACGTGAGCTGCAATGGGCTCACGCACAAAGAACGCTGCACGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGCGGACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGGTATGCTGCTAATGCTCATGTATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAATCAGTGGTGAGATTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACCGTGTGA 2238 44.06 MAEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKARRLLDYLIFCSEIERKVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGSFKIPLVNLLIVEGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARYAANAHVLRELHTLKGHVESVVRLKGLDIETIQQAYTV 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45789954 45795923 + Maker00036265 Lcy5g2280 634095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2280 745 Gene3D - 205 265 IPR023299 GO:0000166(InterPro)
Lcy5g2280 745 SUPERFAMILY Calcium ATPase, transduction domain A 137 186 IPR008250 -
Lcy5g2280 745 SUPERFAMILY HAD-like 250 404 IPR036412 -
Lcy5g2280 745 Gene3D - 140 190 - -
Lcy5g2280 745 FunFam Plasma membrane ATPase 252 406 - -
Lcy5g2280 745 PANTHER CALCIUM-TRANSPORTING ATPASE 138 205 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy5g2280 745 PRINTS H+-transporting ATPase (proton pump) signature 215 233 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2280 745 PRINTS H+-transporting ATPase (proton pump) signature 548 569 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2280 745 PRINTS H+-transporting ATPase (proton pump) signature 389 414 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2280 745 PRINTS H+-transporting ATPase (proton pump) signature 330 346 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2280 745 PRINTS H+-transporting ATPase (proton pump) signature 358 374 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy5g2280 745 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lcy5g2280 745 FunFam ATPase 4 plasma membrane-type 360 603 - -
Lcy5g2280 745 Gene3D - 687 745 - -
Lcy5g2280 745 Pfam haloacid dehalogenase-like hydrolase 214 372 - -
Lcy5g2280 745 Gene3D - 68 139 - -
Lcy5g2280 745 Gene3D - 358 634 - -
Lcy5g2280 745 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Lcy5g2280 745 FunFam Membrane H(+)-ATPase1 200 258 - -
Lcy5g2280 745 Pfam E1-E2 ATPase 137 195 - -
Lcy5g2280 745 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 635 IPR023298 -
Lcy5g2280 745 NCBIfam HAD-IC family P-type ATPase 333 446 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2280 Lcy-Chr5:45789954 Lcy9g1775 Lcy-Chr9:42936955 0 dispersed
Lcy10g1984 Lcy-Chr10:43942630 Lcy5g2280 Lcy-Chr5:45789954 0 wgd
Lcy2g0599 Lcy-Chr2:5111766 Lcy5g2280 Lcy-Chr5:45789954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2280 K01535 - csv:101214920 968.763