Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2280 | ATGGCGGAAAAGCCAGAAGTGTTGGAGGCCGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAACGGCTGAAGATTTTTGGCCACAACAAGCTTGAGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGATTCATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCCGACTGGCAAGATTTTGTGGGTATCATTACCTTGCTTATCATCAACTCGACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGTCTGCGCTTACAGGTGAATCTCTCCCTGTCACGAAAGGTCCTGGTGATGGTGTGTACTCTGGTTCCACTTGTAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGCAAGAAGATTACTTGATTACTTGATTTTCTGTTCAGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTCTGCGTTCACTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTGCCTTTGTTTGACCCACCAAGGCATGATAGTGCAGAGACTATAAGGAGAGCTTTAAATCTTGGAGTAAATGTGAAAATGATTACCGGAGATCAACTGGCCATAGGAAAGGAAACAGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATTGAAAAAGCAGATGGTTTTGCCGGTGTATTCCCTGAGCATAAATACGAGATCGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGCAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTCAGTGTTATCATCAGTGCCGTTTTGACCAGTCGAGCGATATTTCAGAGGATGAAGAATTACACGATTTATGCAGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCCCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTCAACGATGGTTCGTTCAAAATTCCTCTAGTTAATCTGCTGATTGTTGAAGGTACAATCATGACAATATCAAAGGATAGAGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATCTTTACTACTGGCATTGTACTTGGTAGTTACTTGGCAATGATGACGGTCATATTTTTTTGGGCATCGTATAAAACTAACTTTTTCCCTCGAGTCTTTGGGGTGCCAACCCTTGAAAAAACAGCTCATGATGACTTCCGGAAACTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGGAGTTGGTCCTACGTCGAGCGTCCTGGGTTGTTTCTTGTAGTGGCTTTTATACTTGCTCAACTGGTTGCCACTCTGATTGCTGTGTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTCATTTGGCTTTACAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAAGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCGTTCACAAGACAAAAGGATTTCGGAAAGGAACAACGTGAGCTGCAATGGGCTCACGCACAAAGAACGCTGCACGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGCGGACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGGTATGCTGCTAATGCTCATGTATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAATCAGTGGTGAGATTGAAGGGTCTCGATATCGAAACGATTCAACAAGCATACACCGTGTGA | 2238 | 44.06 | MAEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKARRLLDYLIFCSEIERKVHAVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGSFKIPLVNLLIVEGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWASYKTNFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARYAANAHVLRELHTLKGHVESVVRLKGLDIETIQQAYTV | 745 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45789954 | 45795923 | + | Maker00036265 | Lcy5g2280 | 634095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2280 | 745 | Gene3D | - | 205 | 265 | IPR023299 | GO:0000166(InterPro) | |
Lcy5g2280 | 745 | SUPERFAMILY | Calcium ATPase, transduction domain A | 137 | 186 | IPR008250 | - | |
Lcy5g2280 | 745 | SUPERFAMILY | HAD-like | 250 | 404 | IPR036412 | - | |
Lcy5g2280 | 745 | Gene3D | - | 140 | 190 | - | - | |
Lcy5g2280 | 745 | FunFam | Plasma membrane ATPase | 252 | 406 | - | - | |
Lcy5g2280 | 745 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 138 | 205 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
Lcy5g2280 | 745 | PRINTS | H+-transporting ATPase (proton pump) signature | 215 | 233 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy5g2280 | 745 | PRINTS | H+-transporting ATPase (proton pump) signature | 548 | 569 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy5g2280 | 745 | PRINTS | H+-transporting ATPase (proton pump) signature | 389 | 414 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy5g2280 | 745 | PRINTS | H+-transporting ATPase (proton pump) signature | 330 | 346 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy5g2280 | 745 | PRINTS | H+-transporting ATPase (proton pump) signature | 358 | 374 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Lcy5g2280 | 745 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Lcy5g2280 | 745 | FunFam | ATPase 4 plasma membrane-type | 360 | 603 | - | - | |
Lcy5g2280 | 745 | Gene3D | - | 687 | 745 | - | - | |
Lcy5g2280 | 745 | Pfam | haloacid dehalogenase-like hydrolase | 214 | 372 | - | - | |
Lcy5g2280 | 745 | Gene3D | - | 68 | 139 | - | - | |
Lcy5g2280 | 745 | Gene3D | - | 358 | 634 | - | - | |
Lcy5g2280 | 745 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Lcy5g2280 | 745 | FunFam | Membrane H(+)-ATPase1 | 200 | 258 | - | - | |
Lcy5g2280 | 745 | Pfam | E1-E2 ATPase | 137 | 195 | - | - | |
Lcy5g2280 | 745 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 635 | IPR023298 | - | |
Lcy5g2280 | 745 | NCBIfam | HAD-IC family P-type ATPase | 333 | 446 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2280 | Lcy-Chr5:45789954 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | dispersed | |
Lcy10g1984 | Lcy-Chr10:43942630 | Lcy5g2280 | Lcy-Chr5:45789954 | 0 | wgd | |
Lcy2g0599 | Lcy-Chr2:5111766 | Lcy5g2280 | Lcy-Chr5:45789954 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2280 | K01535 | - | csv:101214920 | 968.763 |