Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2283 ATGTGCAAGAAAATTCAAATGGGCATCTTCGTTTTCGTTTTCTCATCGATTTTACTATCAACCATTTTCAGCTCTTGCACTCTTGCTCTTACTGCAGATGGCCTAACGTTGTTGGAAATTAGAAGCGCTTTTAATGACAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCTCCCTGCAAATGGACTGGTATATCTTGTCACCCTGAGGACCAACGGGTCAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGGTTATTTCTTCCAGCATTGGCAAACTCAGTAGATTACAGATACTGGCACTTCACCAAAATGGCTTACATGGATATATTCCTGATGAAATCATCAAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCATCGGATATAGGAAACCTTTCTGCTCTTACAGTACTGGATTTATCAAGCAATTCGTTGAAGGGTGCTATTCCATCATCCATTGGCCGTCTCTCACTTCTGCGCCATTTGAATTTGTCCACTAACTTTTTCTCAGGGGAAATTCCAGATTTTGGAATTCTCAGCACTTTTGGAAGCAATTCGTTCACTGGCAATCTAGATCTCTGTGGTCATCAAGTAAACAAGGCCTGCCGAACCTCATTGGGATTTCCTGCAGTATTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGTGAAAAGACCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAATGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATCCGATGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAGCCAAGCACAAAACTTATTACGTTTCACGGTGACCTACCCTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGACGTTGTCGGTTCAGGAGGATTTGGTATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGACCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGCAGTCTTCCAACTTCAAAGCTTCTTATCTATGATTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCATGAACAAGGACCAGAAAAGCAGCCATTGGATTGGAAAGCTCGTCTAAGGATAGCCTTGGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAAATCGTGCACCGTGATATCAAATCAAGTAACATTCTACTTGATGAGAACTTGGAGCCCCATGTATCTGACTTTGGACTCGCCAAGCTTTTGGTTGACGAGGATGCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTACTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGAGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACGAGAGGTGCAGGGACATCGATGTCGATACTGTAGAAGCAATTCTTGAAATAGCAGCCAAATGCACAGATGCCGACCCGGACAACCGGCCATCAATGAGTCAAGTTTTGCAGTTTCTTGAGCAAGAAGTCATGTCACCATGTCCTAGTGATTTCTACGAGTCTCATTCTGATTACTCTTGA 1824 42.54 MCKKIQMGIFVFVFSSILLSTIFSSCTLALTADGLTLLEIRSAFNDSKNLLGDWEASDESPCKWTGISCHPEDQRVSSINLPYMQLGGVISSSIGKLSRLQILALHQNGLHGYIPDEIIKCTQLRALYLRSNYLQGGIPSDIGNLSALTVLDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGILSTFGSNSFTGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPVKRPSHYVKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQGPEKQPLDWKARLRIALGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDERCRDIDVDTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESHSDYS 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45811634 45820971 + Maker00036428 Lcy5g2283 634098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2283 607 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Lcy5g2283 607 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Lcy5g2283 607 Pfam Leucine Rich Repeat 172 188 IPR001611 GO:0005515(InterPro)
Lcy5g2283 607 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 393 598 - -
Lcy5g2283 607 Pfam Protein kinase domain 320 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2283 607 SMART serkin_6 317 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2283 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g2283 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 78 589 IPR051564 GO:0016020(PANTHER)
Lcy5g2283 607 Gene3D Phosphorylase Kinase; domain 1 276 392 - -
Lcy5g2283 607 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Lcy5g2283 607 Gene3D Ribonuclease Inhibitor 31 217 IPR032675 -
Lcy5g2283 607 ProSiteProfiles Protein kinase domain profile. 317 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g2283 607 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 192 - -
Lcy5g2283 607 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lcy5g2283 607 SUPERFAMILY L domain-like 32 208 - -
Lcy5g2283 607 Gene3D Transferase(Phosphotransferase) domain 1 393 596 - -
Lcy5g2283 607 SUPERFAMILY Protein kinase-like (PK-like) 297 588 IPR011009 -
Lcy5g2283 607 ProSitePatterns Protein kinases ATP-binding region signature. 323 346 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2283 Lcy-Chr5:45811634 Lcy9g1415 Lcy-Chr9:39135363 1.38E-95 dispersed
Lcy9g1511 Lcy-Chr9:40187294 Lcy5g2283 Lcy-Chr5:45811634 7.18E-61 transposed
Lcy9g1512 Lcy-Chr9:40197344 Lcy5g2283 Lcy-Chr5:45811634 2.32E-91 transposed
Lcy10g1992 Lcy-Chr10:44011382 Lcy5g2283 Lcy-Chr5:45811634 1.27E-44 wgd
Lcy2g0596 Lcy-Chr2:5086586 Lcy5g2283 Lcy-Chr5:45811634 1.58E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65982 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2283 - - - 0.0