Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2288 ATGAGAGAGACAGAAACCACCATTGTTGTGCTTAAGCTGCTAATGATATCTGCTTTTGTAATGATATTCCCAACCCTTAATGCTAATATTGCAAATTTTGATGAGGTATGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTGCCTATGAAGCCTACCAACCCCATCCAGAAGAAGTCACTAATAATTTCAACCAGCAAGTTCACAGTTCCTTCAATGGTGCAAATAACACAAGGAGACATTTGAAGAAGTACAATGGTCCATGTTTAGCTACGAATCCTATCGACCGATGTTGGAGATGTGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGTGCCCTTGGCTTTGGCCGTGGAACGACTGGAGGCAAAGATGGAAGATATTACGTGGTGCAAGATTCAAGTGACAACGACTTGCTTAATCCTAAACCGGGAACCTTGCGCTACGGTGTGATACAGGATAGACCACTTTGGATTATATTTGCACGTGACATGGTGATTAGGCTGAGTGAAGAGCTTATAATGACCGATAACAAGACATTAGATGCACGTGGTGCCAATGTGCACATCGCTAATGGCGGTCAAATCACTCTACAATTTGTGAAGAACATAATCATCCATAATCTGCACATTCATGATATCAAGGCTGGCAATGGAGGCCTTGTAAGAGACTCGGTGAACCACTATGGATTTCGAACACCGAGTGATGGTGATGGCATCTCGATGTTTGGAGCCTCAAAGGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTTATTGATGCAGTCATGGCATCTACTGGCATTACCATCTCCAACTGTCACTTCACCCACCATAACGATGTGATACTATTAGGTGCAAGTGATAGCTACTCGAACGATCAGATTCTGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGCCGATGGGGGTTCGTCCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATTGGCGGCAGCCACAATCCCACCATTGTCAGCCAGGGCAATCGCTTCATCGCCCCACCAGACCCAAATTGCAAAGAGGTGACGAAGAGGGCGTACGCACCAGAAAGCGAGTGGAAATCGTGGAACTGGAGATCAGAGGGAGATCTGATGATGAATGGAGCTTTCTTCGTCCAATCTGGGAGCCCCATCAGGAAATACTCCAAGAAAGATGTTATCCATGCAAAACCTGGGACCTTCGTGAGCAGGCTTACACGATTCTCTGGGCCTTTGAAATGCATAAGGAACAAGCCGTGTTAG 1320 45.08 MRETETTIVVLKLLMISAFVMIFPTLNANIANFDEVWQKRAEEAKKAAYEAYQPHPEEVTNNFNQQVHSSFNGANNTRRHLKKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKDGRYYVVQDSSDNDLLNPKPGTLRYGVIQDRPLWIIFARDMVIRLSEELIMTDNKTLDARGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLVRDSVNHYGFRTPSDGDGISMFGASKVWIDHVSMSNCQDGLIDAVMASTGITISNCHFTHHNDVILLGASDSYSNDQILQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIVSQGNRFIAPPDPNCKEVTKRAYAPESEWKSWNWRSEGDLMMNGAFFVQSGSPIRKYSKKDVIHAKPGTFVSRLTRFSGPLKCIRNKPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45853840 45856607 + Maker00036709 Lcy5g2288 634103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2288 439 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570(InterPro)
Lcy5g2288 439 Gene3D - 91 432 IPR012334 -
Lcy5g2288 439 SUPERFAMILY Pectin lyase-like 92 429 IPR011050 -
Lcy5g2288 439 PANTHER PECTATE LYASE 18-RELATED 22 435 IPR045032 GO:0030570(InterPro)
Lcy5g2288 439 Pfam Pectate lyase 180 357 IPR002022 -
Lcy5g2288 439 SMART amb_all 166 363 IPR002022 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Lcy5g2288 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0387 Lcy-Chr10:8079519 Lcy5g2288 Lcy-Chr5:45853840 4.04E-225 dispersed
Lcy10g0391 Lcy-Chr10:8233553 Lcy5g2288 Lcy-Chr5:45853840 9.96E-226 dispersed
Lcy5g2288 Lcy-Chr5:45853840 Lcy7g0255 Lcy-Chr7:2216218 1.70E-207 dispersed
Lcy5g2288 Lcy-Chr5:45853840 Lcy13g0445 Lcy-Chr13:5232370 3.29E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2288 K01728 - csv:101218812 806.979