Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g2288 | ATGAGAGAGACAGAAACCACCATTGTTGTGCTTAAGCTGCTAATGATATCTGCTTTTGTAATGATATTCCCAACCCTTAATGCTAATATTGCAAATTTTGATGAGGTATGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTGCCTATGAAGCCTACCAACCCCATCCAGAAGAAGTCACTAATAATTTCAACCAGCAAGTTCACAGTTCCTTCAATGGTGCAAATAACACAAGGAGACATTTGAAGAAGTACAATGGTCCATGTTTAGCTACGAATCCTATCGACCGATGTTGGAGATGTGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGTGCCCTTGGCTTTGGCCGTGGAACGACTGGAGGCAAAGATGGAAGATATTACGTGGTGCAAGATTCAAGTGACAACGACTTGCTTAATCCTAAACCGGGAACCTTGCGCTACGGTGTGATACAGGATAGACCACTTTGGATTATATTTGCACGTGACATGGTGATTAGGCTGAGTGAAGAGCTTATAATGACCGATAACAAGACATTAGATGCACGTGGTGCCAATGTGCACATCGCTAATGGCGGTCAAATCACTCTACAATTTGTGAAGAACATAATCATCCATAATCTGCACATTCATGATATCAAGGCTGGCAATGGAGGCCTTGTAAGAGACTCGGTGAACCACTATGGATTTCGAACACCGAGTGATGGTGATGGCATCTCGATGTTTGGAGCCTCAAAGGTTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGACTTATTGATGCAGTCATGGCATCTACTGGCATTACCATCTCCAACTGTCACTTCACCCACCATAACGATGTGATACTATTAGGTGCAAGTGATAGCTACTCGAACGATCAGATTCTGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGCCGATGGGGGTTCGTCCATGTAGTCAATAATGACTACACTCACTGGCTTATGTACGCCATTGGCGGCAGCCACAATCCCACCATTGTCAGCCAGGGCAATCGCTTCATCGCCCCACCAGACCCAAATTGCAAAGAGGTGACGAAGAGGGCGTACGCACCAGAAAGCGAGTGGAAATCGTGGAACTGGAGATCAGAGGGAGATCTGATGATGAATGGAGCTTTCTTCGTCCAATCTGGGAGCCCCATCAGGAAATACTCCAAGAAAGATGTTATCCATGCAAAACCTGGGACCTTCGTGAGCAGGCTTACACGATTCTCTGGGCCTTTGAAATGCATAAGGAACAAGCCGTGTTAG | 1320 | 45.08 | MRETETTIVVLKLLMISAFVMIFPTLNANIANFDEVWQKRAEEAKKAAYEAYQPHPEEVTNNFNQQVHSSFNGANNTRRHLKKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKDGRYYVVQDSSDNDLLNPKPGTLRYGVIQDRPLWIIFARDMVIRLSEELIMTDNKTLDARGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLVRDSVNHYGFRTPSDGDGISMFGASKVWIDHVSMSNCQDGLIDAVMASTGITISNCHFTHHNDVILLGASDSYSNDQILQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIVSQGNRFIAPPDPNCKEVTKRAYAPESEWKSWNWRSEGDLMMNGAFFVQSGSPIRKYSKKDVIHAKPGTFVSRLTRFSGPLKCIRNKPC | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45853840 | 45856607 | + | Maker00036709 | Lcy5g2288 | 634103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g2288 | 439 | Pfam | Pectate lyase, N terminus | 29 | 81 | IPR007524 | GO:0030570(InterPro) | |
Lcy5g2288 | 439 | Gene3D | - | 91 | 432 | IPR012334 | - | |
Lcy5g2288 | 439 | SUPERFAMILY | Pectin lyase-like | 92 | 429 | IPR011050 | - | |
Lcy5g2288 | 439 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 435 | IPR045032 | GO:0030570(InterPro) | |
Lcy5g2288 | 439 | Pfam | Pectate lyase | 180 | 357 | IPR002022 | - | |
Lcy5g2288 | 439 | SMART | amb_all | 166 | 363 | IPR002022 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 114 | 131 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 174 | 190 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 138 | 163 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 382 | 406 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 318 | 337 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 238 | 259 | IPR018082 | - | |
Lcy5g2288 | 439 | PRINTS | Pollen allergen Amb family signature | 340 | 359 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0387 | Lcy-Chr10:8079519 | Lcy5g2288 | Lcy-Chr5:45853840 | 4.04E-225 | dispersed | |
Lcy10g0391 | Lcy-Chr10:8233553 | Lcy5g2288 | Lcy-Chr5:45853840 | 9.96E-226 | dispersed | |
Lcy5g2288 | Lcy-Chr5:45853840 | Lcy7g0255 | Lcy-Chr7:2216218 | 1.70E-207 | dispersed | |
Lcy5g2288 | Lcy-Chr5:45853840 | Lcy13g0445 | Lcy-Chr13:5232370 | 3.29E-173 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g2288 | K01728 | - | csv:101218812 | 806.979 |