Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2290 ATGGACCCCGGAGGGAAATTAGACCATAGGGTTGGGCCAAGGCCAAAGGGATTGGGCCTTCGGCCTCGGCCCGCTTGTGCAGGCCGAGTCTCCTCCCCTCTGCTCGGTCCCTGGAGTCCTTGGGTTGTCCTGGTTCAATCTGCAGCTTTGCATCGCATCTATCGATCTCTCTGGATCATGGCGCCGGTTTTGTCTCGGTTACTTCTCCGTCGGAATGTTCAGACATCATTTTTTCGCGCCTCCATCGGATTGAACTTTTGCAGCAGAGAAATTCATTCTTTACTTTTTTCATCGGTAGAAGTGGAGCAAATTTCAGGTTCTAAGCCAGGAGAAGTTCACAACTTGGGAATGCTGACACAGCATGTGTTTATTTTAGTGCAGGGTAAATGGATTCGATCTTCTGGTTGGAATACTATTCTGGATCCTTTAAATGGAGAACCATTCATTAAAGTTGCCGAAGTCGATGAAACAGAAATTCAGCCATTTGTGAAGAGTCTGAACAAATGCCCCAAGCATGGCTTACATAATCCTTTCAAATCACCCGAGAGATACCTTATGTTTGGAGATATATCTTCCAAGGCTGCCGACGTGCTTTCCAAGCCAGAGGTGACTGACTTTTTTGCAAGGTTGATTCAAAGAGTTTCTCCAAAAAGTTATCAACAAGCTTGTGCTGAAGTAAATGTTACTGTAAAATTTCTACGGAACTTCTCTGGTGATCAGGTTCGCTTCTTGGCAAGGTCCTTTGCCATACCTGGTGATCATCTTGGACAACACAGTCATGGTTTCCGTTGGCCTTATGGACCTGTTGCAATCATCACTCCTTTCAACTTTCCCTTGGAAATTCCTGTACTTCAGCTCATGGGTGCACTTTACATGGGCAACAAACCTGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCATCATTGTGGGCTACCTCTAGAAGATTTGGATTTTATAAATTGTGATGGGAAGACAATGAACAGGTTACTGCTGGAGGCAAATCCATCTATGACTCTTTTCACTGGTAGCTCAAGGGTGGCAGATAAGTTGGCCGTCGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTTGATTGGAAAATCTTAGGACCAGATGTTCAAGAGGAAGATTATGTTGCATGGGTTTGTGATCAAGATGCATATGCTTGTAGTGGCCAGAAATGCTCAGCACAGTCGATACTGTTCATGCATGAGAATTGGTCGGCAACTTCACTTATTTCGAAGATAAAGGATCTTGCAGAGAGAAGAAATTTGACTGATTTAACGATTGGCCCAGTCCTTACATTCACTAATGAAATGATACTAGATCACATGAATAAGTTGCTCAAGATACCAGGGGCAAAGTTACTATTTGGAGGCGAACCTCTTAAAAACCATTCCATTCCACCGATATATGGTGCTATAAAACCCACTGCAGTATATATTCCGCTTGAAGAAATGATGAAAGACGACAATTATGAGCTTGTGACCAAAGAAATTTTTGGACCATTCCAGATTATTACTGAATATAAGAAAGATCAACTGTCAACTGTGTTGGATGCTCTTGAGCGTATGCATGCTCATCTGACCGCGGCTGTGGTTTCAAATGACCCTCTATTTTTGCAGGAAGTAATTGGGAATACTGTGAACGGAACGACATATGCTGGTTTACGAGCAAGAACAACTGGAGCTCCACAAAACCATTGGTTTGGACCAGCGGGAGATCCCAGAGGTGCAGGTATCGGGACCCCGGAAGCGATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGACAATGGCCCATTGCCCTCGCACTGGACAATCCCACCATCGACTTGA 1875 44.0 MDPGGKLDHRVGPRPKGLGLRPRPACAGRVSSPLLGPWSPWVVLVQSAALHRIYRSLWIMAPVLSRLLLRRNVQTSFFRASIGLNFCSREIHSLLFSSVEVEQISGSKPGEVHNLGMLTQHVFILVQGKWIRSSGWNTILDPLNGEPFIKVAEVDETEIQPFVKSLNKCPKHGLHNPFKSPERYLMFGDISSKAADVLSKPEVTDFFARLIQRVSPKSYQQACAEVNVTVKFLRNFSGDQVRFLARSFAIPGDHLGQHSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNRLLLEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVQEEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSATSLISKIKDLAERRNLTDLTIGPVLTFTNEMILDHMNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTAVYIPLEEMMKDDNYELVTKEIFGPFQIITEYKKDQLSTVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDNGPLPSHWTIPPST 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45867639 45874936 - Maker00036262 Lcy5g2290 634105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2290 624 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 115 618 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
Lcy5g2290 624 Pfam Aldehyde dehydrogenase family 138 565 IPR015590 GO:0016491(InterPro)
Lcy5g2290 624 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 113 373 IPR016162 GO:0016491(InterPro)
Lcy5g2290 624 MobiDBLite consensus disorder prediction 1 24 - -
Lcy5g2290 624 MobiDBLite consensus disorder prediction 1 15 - -
Lcy5g2290 624 FunFam probable aldehyde dehydrogenase 116 373 - -
Lcy5g2290 624 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 398 409 IPR016160 GO:0016491(InterPro)
Lcy5g2290 624 SUPERFAMILY ALDH-like 124 592 IPR016161 GO:0016491(InterPro)
Lcy5g2290 624 FunFam Aldehyde dehydrogenase 12 381 569 - -
Lcy5g2290 624 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 374 565 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2290 K00294 - - csv:101214440 1036.94
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30