Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2291 ATGGAGGCTGCTGCTGCTTTTGGTCGTCCAAGGCCTGTCGTCAAGACCGAGAAGCCCACCGGAGATGTCGACGGGGACGGGGATTCTCCTTCGAAACAACGTCTTCTCGTTAAGATGGGGAATAATTATGGAAAACAAGAAGATAAAACAAGCAATTCATCTGATCAAAAGGATTTGAGCTGCACCAAACCTCAGGAAGATCAACTAGAATCCGCCCGAGCGGAAATGGGGGAAGTGAGAGAAGAAAACCAGAGATTAAAAATGAGTTTAAGCCAAATCATGAAGGATTACGAAGCTCTAAGAACGCAATTCCTTGGAATCGTCAGACGAGAAGGGAAGAAATTATCGGAAGATGATGACAAGTTGAACAACGAACAACACCACGACGACGATGATCGAAACCAAACTGACGAAACAGAGCTCGTTTCACTAACGTTGGGGAGGTTTCCGACGACGGAGAAGAATAAGAATAAGGCGGCAGACGAGAAATTAGATCAGAACAATAAGAGTTCTCAAGGCCGAGAGATGATTGGCGAGGAACAGGGCGTTAAAGAGACTTTATCGCTCGGTTTGAACTGCAAATTCGAACAAGAATCGACTGTCGTTAAAGAAGTTGATTCTCCGAATCGGAGTCTGACAAATAGTTTCGATCATGAGGCGAAGGAGGAAGCTGGAGAGACGAGTTGGCCGCCGAGTAAAGGGGTAAAGACGATGAGAAGCGGTGATGATGATGTTGCGCCGCAGAATCCGCCCAAGCGCGCTAGGGTTTGTGTTAGAGCGCGATGCGAGACAGCTACGATGAACGACGGATGCCAATGGAGAAAATACGGGCAAAAGATAGCGAAAGGAAACCCATGTCCACGAGCATACTATCGCTGCACAGGCTCACCAACTTGTCCAGTTCGCAAACAAGTCCAACGATGCGCCGACGACATGTCCATCTTAATCACCACCTACGAAGGCACCCACAACCACCAACTACCCGTCTCCGCCACCGCCATGGCCTCCACCACCTCCGCCGCCGCATCCATGCTCCTCTCCGGCTCCTCCTCCTCCTCCTCCACCTCCGCCACCGCAAATCTCCACGGCCTAAACTTCTACCTCAACAACCCAACAAACAACAACAATCCCAAACCCAATTTTTACTTACCCAACAACTCCTCCATCATCTCTTCAACTTCTCCAACTCATCCCACCATCACTTTAGACCTCACTTCAAATCCTTCCTCCTCTTCCACTTCCATCTCCGCCCATCTTGGAAAGTTCCCGACCGGATTCTCCAATCCTCGGTACCCTTTCACGAGCCAGCTCGACTTCGGATCTTCTAGAAACAATGTGCTGTCGTGGAATAACGGCCTTCTTAGTTACAACAGAAATAACAACCCCACTGCCACGTCGACCACCAATGCAATCTACCAAAACTACATCCAGCAACAGCAGCAACGGAACAATAATCTTAATCATCACGGTGTCGTCGCTGCTGCTGCCACGTCACTGCCACATCAGCAGCAGCCTTTGCCCGACACCATCGCCGCCGCCACCAAGGCCATCACGGCCGACCCGAGCTTCCAGTCTGCTCTCGCTGCTGCTCTCACGTCGATCATTGGCACCGGCTCCGGCGCCGGTGTGATTAAGTCGTCGGCGAGAGGTGAACAGCCGTTGTTTCAATTGACGTCGACGGCGGCGAATAAAGGGAATGGATGTGGGACGAGCTTTTTGGGTAATATTGCGGCGGCGACGGCGACGACAACGAAGAGTAATTCGCCGCCGGCCGGGAATGTGGTGTTTGTGCCGGCGAGTTCGCTGCCGTTCTCGAATCCGAAGAGTGCGTCGGCGTCTCCGGGTGATCATATTGATCTTACCAATTGA 1869 51.36 MEAAAAFGRPRPVVKTEKPTGDVDGDGDSPSKQRLLVKMGNNYGKQEDKTSNSSDQKDLSCTKPQEDQLESARAEMGEVREENQRLKMSLSQIMKDYEALRTQFLGIVRREGKKLSEDDDKLNNEQHHDDDDRNQTDETELVSLTLGRFPTTEKNKNKAADEKLDQNNKSSQGREMIGEEQGVKETLSLGLNCKFEQESTVVKEVDSPNRSLTNSFDHEAKEEAGETSWPPSKGVKTMRSGDDDVAPQNPPKRARVCVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGTHNHQLPVSATAMASTTSAAASMLLSGSSSSSSTSATANLHGLNFYLNNPTNNNNPKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSTSISAHLGKFPTGFSNPRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNNPTATSTTNAIYQNYIQQQQQRNNNLNHHGVVAAAATSLPHQQQPLPDTIAAATKAITADPSFQSALAAALTSIIGTGSGAGVIKSSARGEQPLFQLTSTAANKGNGCGTSFLGNIAAATATTTKSNSPPAGNVVFVPASSLPFSNPKSASASPGDHIDLTN 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45887555 45891094 + Maker00036868 Lcy5g2291 634106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2291 622 SMART WRKY_cls 267 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g2291 622 MobiDBLite consensus disorder prediction 15 31 - -
Lcy5g2291 622 MobiDBLite consensus disorder prediction 204 252 - -
Lcy5g2291 622 Gene3D WRKY domain 252 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g2291 622 MobiDBLite consensus disorder prediction 112 138 - -
Lcy5g2291 622 MobiDBLite consensus disorder prediction 154 169 - -
Lcy5g2291 622 MobiDBLite consensus disorder prediction 50 83 - -
Lcy5g2291 622 FunFam probable WRKY transcription factor 31 252 329 - -
Lcy5g2291 622 Coils Coil 69 103 - -
Lcy5g2291 622 MobiDBLite consensus disorder prediction 1 83 - -
Lcy5g2291 622 MobiDBLite consensus disorder prediction 112 179 - -
Lcy5g2291 622 SUPERFAMILY WRKY DNA-binding domain 260 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g2291 622 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g2291 622 Pfam WRKY DNA -binding domain 268 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g2291 622 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 537 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1830 Lcy-Chr13:37287886 Lcy5g2291 Lcy-Chr5:45887555 7.78E-23 dispersed
Lcy5g2291 Lcy-Chr5:45887555 Lcy6g0540 Lcy-Chr6:5106307 2.63E-45 dispersed
Lcy2g0589 Lcy-Chr2:5035337 Lcy5g2291 Lcy-Chr5:45887555 1.70E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20167 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2291 - - - 0.0