Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g2326 ATGCCGCCGAGACGATATGCTGTTGGACGGGCCGATGAGGCTACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCGTTTCCACTTTCATCTTCGTCTTTGCTGGCGAAGGCTCCGTCCTCGCTCTTGATAAAATTTTCAGGCCAGCAGATTATGGAACTTATGGCCATGGAAGTTACGGCCGAGGTTATGATCACGGGCACGGTTACGGTTACGGTTGGAGGACGGGCGACACGGGCAGAGGGGCGTCAGATTTAGTAGTAATAGCGATAGCGCATGCATTTGCGCTGTTCGCCGCGGTTGCAGCGAGTATCAATGTCTCGGGTGGGCATGTGAATCCTGCTGTAACTTTTGGAGCTCTTCTTGGAGGGAGAATATCGCTCATCCGTGCATTCTTCTATTGGGTTGCTCAGATCTTGGGCGCTATCGTCGCTTCCCTTCTCTTGAGACTTGCAACCGGTGGCATGAGGCCTATGGGATTCTTCGTTTCATCAGGGATATCAGAATTGCACGGCTTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTGTACGCAACAGCAATAGATCCAAAGAGGGGCAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTGATAGTCGGGGCGAATATTCTGGTGGGTGGGGCCTTTGATGGGGCCTGCATGAACCCGGCCCGGGCATTTGGGCCGTCCTTGGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATCGGCCCATTACTGGGAGGTGGGCTGGCTGCGCTGGTGTATGAGTACCTGGTCATTCCAGTTGAACCTCCTCTGCATACCCACCAGCCTTTGGCTCCTGAAGATTACTAA 858 53.15 MPPRRYAVGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKIFRPADYGTYGHGSYGRGYDHGHGYGYGWRTGDTGRGASDLVVIAIAHAFALFAAVAASINVSGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46134097 46135440 - Maker00036405 Lcy5g2326 634141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g2326 285 FunFam Probable aquaporin TIP1-1 67 281 - -
Lcy5g2326 285 Gene3D Glycerol uptake facilitator protein. 5 271 IPR023271 -
Lcy5g2326 285 Pfam Major intrinsic protein 14 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 PANTHER AQUAPORIN-8 5 275 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy5g2326 285 SUPERFAMILY Aquaporin-like 13 276 IPR023271 -
Lcy5g2326 285 CDD MIP 21 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lcy5g2326 285 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g2326 285 NCBIfam MIP family channel protein 25 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0321 Lcy-Chr5:3082269 Lcy5g2326 Lcy-Chr5:46134097 1.87E-90 dispersed
Lcy5g2326 Lcy-Chr5:46134097 Lcy7g0654 Lcy-Chr7:6003407 9.38E-33 dispersed
Lcy5g2326 Lcy-Chr5:46134097 Lcy1g1316 Lcy-Chr1:12646879 3.52E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g2326 K09873 - csv:101208863 488.034